Variant report

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11012606	1.00[ASN][1000 genomes]
rs11012680	0.83[EUR][1000 genomes]
rs11594245	0.91[EUR][1000 genomes]
rs11597239	0.97[EUR][1000 genomes]
rs11597707	0.97[EUR][1000 genomes]
rs12413399	0.97[EUR][1000 genomes]
rs12762379	1.00[ASN][1000 genomes]
rs12770644	1.00[ASN][1000 genomes]
rs12779845	1.00[ASN][1000 genomes]
rs16921724	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16921796	0.81[EUR][1000 genomes]
rs2039029	0.91[EUR][1000 genomes]
rs34297119	0.97[EUR][1000 genomes]
rs35841043	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3940961	1.00[ASN][1000 genomes]
rs4515870	1.00[ASN][1000 genomes]
rs55773472	0.94[EUR][1000 genomes]
rs55953944	0.97[EUR][1000 genomes]
rs58335572	1.00[ASN][1000 genomes]
rs59781699	0.81[EUR][1000 genomes]
rs6415965	0.91[EUR][1000 genomes]
rs6482173	1.00[ASN][1000 genomes]
rs7071130	0.91[EUR][1000 genomes]
rs7074362	1.00[ASN][1000 genomes]
rs7079617	0.91[EUR][1000 genomes]
rs7080007	0.91[EUR][1000 genomes]
rs7089695	0.97[EUR][1000 genomes]
rs7098870	0.91[EUR][1000 genomes]
rs72793061	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793067	0.97[EUR][1000 genomes]
rs72793075	0.97[EUR][1000 genomes]
rs72793077	0.88[EUR][1000 genomes]
rs72793079	0.97[EUR][1000 genomes]
rs72793086	0.84[EUR][1000 genomes]
rs72793090	0.81[EUR][1000 genomes]
rs72794850	1.00[ASN][1000 genomes]
rs72794858	1.00[ASN][1000 genomes]
rs72798577	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7893639	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21654000-21676800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:21654200-21681400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:21668800-21674400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:21671200-21673600	Weak transcription	Placenta	Placenta
5	chr10:21672200-21672800	Enhancers	A549	lung

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