Variant report

Variant	rs11594245
Chromosome Location	chr10:21653034-21653035
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21652515..21654513-chr10:21784528..21786535,3	MCF-7	breast:
2	chr10:21651394..21654068-chr10:21783988..21786683,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204682	Chromatin interaction
ENSG00000222071	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10828238	0.81[ASN][1000 genomes]
rs11012680	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs11012681	0.81[ASN][1000 genomes]
rs11595231	0.91[EUR][1000 genomes]
rs11597239	0.94[EUR][1000 genomes]
rs11597707	0.94[EUR][1000 genomes]
rs12245880	0.81[ASN][1000 genomes]
rs12413399	0.94[EUR][1000 genomes]
rs16921771	0.90[GIH][hapmap]
rs16921796	0.85[EUR][1000 genomes]
rs1927242	1.00[ASN][1000 genomes]
rs2039029	0.88[EUR][1000 genomes]
rs2209804	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs34297119	0.94[EUR][1000 genomes]
rs35841043	0.94[EUR][1000 genomes]
rs4381272	0.81[ASN][1000 genomes]
rs4448595	0.81[ASN][1000 genomes]
rs55773472	0.91[EUR][1000 genomes]
rs55953944	0.94[EUR][1000 genomes]
rs58809874	0.81[ASN][1000 genomes]
rs59781699	0.85[EUR][1000 genomes]
rs6415965	0.88[EUR][1000 genomes]
rs7068408	0.92[CHD][hapmap];0.81[ASN][1000 genomes]
rs7071130	0.88[EUR][1000 genomes]
rs7079617	0.88[EUR][1000 genomes]
rs7080007	0.88[EUR][1000 genomes]
rs7081480	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086407	0.81[ASN][1000 genomes]
rs7089695	0.94[EUR][1000 genomes]
rs7098870	0.88[EUR][1000 genomes]
rs72793061	0.88[EUR][1000 genomes]
rs72793067	0.94[EUR][1000 genomes]
rs72793075	0.94[EUR][1000 genomes]
rs72793077	0.97[EUR][1000 genomes]
rs72793079	0.94[EUR][1000 genomes]
rs72793086	0.82[EUR][1000 genomes]
rs72793090	0.85[EUR][1000 genomes]
rs7893639	0.88[EUR][1000 genomes]
rs7898040	0.92[CHD][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21648200-21653400	Weak transcription	Ovary	ovary
2	chr10:21648600-21653400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:21651000-21653600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:21651000-21655800	Enhancers	HMEC	breast
5	chr10:21651200-21654600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:21651400-21654600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr10:21651800-21654400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr10:21651800-21654600	Enhancers	Fetal Muscle Leg	muscle
9	chr10:21651800-21655200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:21652000-21653200	Enhancers	Small Intestine	intestine
11	chr10:21652000-21653400	Flanking Active TSS	Hela-S3	cervix
12	chr10:21652000-21653800	Enhancers	Fetal Kidney	kidney
13	chr10:21652000-21654000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr10:21652000-21654000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:21652000-21654000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr10:21652000-21654000	Enhancers	Adipose Nuclei	Adipose
17	chr10:21652000-21654000	Enhancers	Duodenum Mucosa	Duodenum
18	chr10:21652000-21654000	Enhancers	Fetal Intestine Small	intestine
19	chr10:21652000-21654000	Enhancers	NHLF	lung
20	chr10:21652000-21654200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr10:21652000-21654200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr10:21652000-21654200	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr10:21652000-21654200	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr10:21652000-21654200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr10:21652000-21654200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr10:21652000-21654200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr10:21652000-21654200	Enhancers	Fetal Intestine Large	intestine
28	chr10:21652000-21654200	Enhancers	Fetal Lung	lung
29	chr10:21652000-21654400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr10:21652000-21654400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:21652000-21654400	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr10:21652000-21654600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:21652000-21654600	Enhancers	Osteobl	bone
34	chr10:21652000-21655200	Enhancers	NHDF-Ad	bronchial
35	chr10:21652000-21655800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:21652200-21653200	Flanking Active TSS	A549	lung
37	chr10:21652200-21653400	Weak transcription	Left Ventricle	heart
38	chr10:21652200-21653600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr10:21652200-21654200	Weak transcription	Lung	lung
40	chr10:21652200-21658000	Weak transcription	Fetal Muscle Trunk	muscle
41	chr10:21652200-21661200	Weak transcription	Right Atrium	heart
42	chr10:21652400-21653200	Enhancers	Colon Smooth Muscle	Colon
43	chr10:21652400-21654400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr10:21652400-21657000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr10:21652600-21653600	Weak transcription	Placenta	Placenta
46	chr10:21652600-21653600	Weak transcription	Psoas Muscle	Psoas
47	chr10:21652600-21653800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr10:21652600-21658000	Weak transcription	Fetal Stomach	stomach
49	chr10:21652600-21661800	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr10:21652800-21653200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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