Variant report

Variant	rs7068408
Chromosome Location	chr10:21652235-21652236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21651394..21654068-chr10:21783988..21786683,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204682	Chromatin interaction
ENSG00000222071	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10828238	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012680	1.00[JPT][hapmap]
rs11012681	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594245	0.92[CHD][hapmap];0.81[ASN][1000 genomes]
rs12245880	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1556002	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16921773	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1927242	0.81[ASN][1000 genomes]
rs2209804	1.00[JPT][hapmap]
rs4381272	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4448595	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57816128	0.95[EUR][1000 genomes]
rs58809874	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081480	0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7086407	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091815	0.84[ASN][1000 genomes]
rs7092545	0.83[GIH][hapmap]
rs7898040	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913493	0.94[ASN][1000 genomes]
rs7923849	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21648200-21653400	Weak transcription	Ovary	ovary
2	chr10:21648600-21653400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:21650000-21652600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:21650000-21652600	Enhancers	Placenta	Placenta
5	chr10:21650600-21652800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:21650600-21653000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr10:21650800-21652800	Enhancers	NHEK	skin
8	chr10:21651000-21653600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:21651000-21655800	Enhancers	HMEC	breast
10	chr10:21651200-21652400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:21651200-21654600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:21651400-21654600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr10:21651600-21652800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:21651800-21652800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:21651800-21652800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:21651800-21652800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:21651800-21652800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:21651800-21653000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr10:21651800-21653000	Enhancers	HUVEC	blood vessel
20	chr10:21651800-21654400	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr10:21651800-21654600	Enhancers	Fetal Muscle Leg	muscle
22	chr10:21651800-21655200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:21652000-21652400	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr10:21652000-21652600	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr10:21652000-21652600	Enhancers	Fetal Stomach	stomach
26	chr10:21652000-21652600	Enhancers	Psoas Muscle	Psoas
27	chr10:21652000-21652800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr10:21652000-21652800	Enhancers	HepG2	liver
29	chr10:21652000-21653000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:21652000-21653000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:21652000-21653200	Enhancers	Small Intestine	intestine
32	chr10:21652000-21653400	Flanking Active TSS	Hela-S3	cervix
33	chr10:21652000-21653800	Enhancers	Fetal Kidney	kidney
34	chr10:21652000-21654000	Enhancers	H1 Cell Line	embryonic stem cell
35	chr10:21652000-21654000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:21652000-21654000	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr10:21652000-21654000	Enhancers	Adipose Nuclei	Adipose
38	chr10:21652000-21654000	Enhancers	Duodenum Mucosa	Duodenum
39	chr10:21652000-21654000	Enhancers	Fetal Intestine Small	intestine
40	chr10:21652000-21654000	Enhancers	NHLF	lung
41	chr10:21652000-21654200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr10:21652000-21654200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr10:21652000-21654200	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr10:21652000-21654200	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr10:21652000-21654200	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr10:21652000-21654200	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr10:21652000-21654200	Enhancers	Muscle Satellite Cultured Cells	--
48	chr10:21652000-21654200	Enhancers	Fetal Intestine Large	intestine
49	chr10:21652000-21654200	Enhancers	Fetal Lung	lung
50	chr10:21652000-21654400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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