Variant report

Variant	rs16921773
Chromosome Location	chr10:21652949-21652950
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21652515..21654513-chr10:21784528..21786535,3	MCF-7	breast:
2	chr10:21651394..21654068-chr10:21783988..21786683,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204682	Chromatin interaction
ENSG00000222071	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10828238	0.94[EUR][1000 genomes]
rs11012681	0.94[EUR][1000 genomes]
rs11012737	1.00[CHB][hapmap]
rs12357321	1.00[CHB][hapmap]
rs12770228	1.00[CHB][hapmap]
rs1556002	0.94[EUR][1000 genomes]
rs16921779	1.00[CHB][hapmap]
rs57816128	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58809874	1.00[EUR][1000 genomes]
rs7068408	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7084454	1.00[CHB][hapmap]
rs7086407	0.96[EUR][1000 genomes]
rs7898040	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs946711	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21648200-21653400	Weak transcription	Ovary	ovary
2	chr10:21648600-21653400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:21650600-21653000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr10:21651000-21653600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:21651000-21655800	Enhancers	HMEC	breast
6	chr10:21651200-21654600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:21651400-21654600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr10:21651800-21653000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr10:21651800-21653000	Enhancers	HUVEC	blood vessel
10	chr10:21651800-21654400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr10:21651800-21654600	Enhancers	Fetal Muscle Leg	muscle
12	chr10:21651800-21655200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:21652000-21653000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:21652000-21653000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:21652000-21653200	Enhancers	Small Intestine	intestine
16	chr10:21652000-21653400	Flanking Active TSS	Hela-S3	cervix
17	chr10:21652000-21653800	Enhancers	Fetal Kidney	kidney
18	chr10:21652000-21654000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr10:21652000-21654000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:21652000-21654000	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr10:21652000-21654000	Enhancers	Adipose Nuclei	Adipose
22	chr10:21652000-21654000	Enhancers	Duodenum Mucosa	Duodenum
23	chr10:21652000-21654000	Enhancers	Fetal Intestine Small	intestine
24	chr10:21652000-21654000	Enhancers	NHLF	lung
25	chr10:21652000-21654200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr10:21652000-21654200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr10:21652000-21654200	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr10:21652000-21654200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr10:21652000-21654200	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr10:21652000-21654200	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr10:21652000-21654200	Enhancers	Muscle Satellite Cultured Cells	--
32	chr10:21652000-21654200	Enhancers	Fetal Intestine Large	intestine
33	chr10:21652000-21654200	Enhancers	Fetal Lung	lung
34	chr10:21652000-21654400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:21652000-21654400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:21652000-21654400	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr10:21652000-21654600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:21652000-21654600	Enhancers	Osteobl	bone
39	chr10:21652000-21655200	Enhancers	NHDF-Ad	bronchial
40	chr10:21652000-21655800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:21652200-21653000	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr10:21652200-21653000	Enhancers	NH-A	brain
43	chr10:21652200-21653200	Flanking Active TSS	A549	lung
44	chr10:21652200-21653400	Weak transcription	Left Ventricle	heart
45	chr10:21652200-21653600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr10:21652200-21654200	Weak transcription	Lung	lung
47	chr10:21652200-21658000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr10:21652200-21661200	Weak transcription	Right Atrium	heart
49	chr10:21652400-21653000	Enhancers	H9 Cell Line	embryonic stem cell
50	chr10:21652400-21653200	Enhancers	Colon Smooth Muscle	Colon

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