Variant report

Variant	rs16921779
Chromosome Location	chr10:21656194-21656195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21654775..21657388-chr10:21784065..21786314,2	MCF-7	breast:
2	chr10:21647943..21649942-chr10:21653951..21656428,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000222071	Chromatin interaction
ENSG00000204682	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11012673	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11012737	1.00[CHB][hapmap]
rs12357321	1.00[CHB][hapmap]
rs12770228	1.00[CHB][hapmap]
rs16921726	0.82[CEU][hapmap];1.00[CHD][hapmap]
rs16921729	1.00[CEU][hapmap]
rs16921773	1.00[CHB][hapmap]
rs16921789	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34019318	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34891645	0.83[ASN][1000 genomes]
rs55782349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56324716	0.87[EUR][1000 genomes]
rs58722636	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60360051	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61849963	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61849964	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61849974	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61849975	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61849976	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61851542	0.87[EUR][1000 genomes]
rs7084454	1.00[CHB][hapmap]
rs7091420	0.83[EUR][1000 genomes]
rs74120936	0.80[AFR][1000 genomes]
rs7913116	0.87[EUR][1000 genomes]
rs7922927	0.82[CEU][hapmap];1.00[CHD][hapmap]
rs946711	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21652200-21658000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:21652200-21661200	Weak transcription	Right Atrium	heart
3	chr10:21652400-21657000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr10:21652600-21658000	Weak transcription	Fetal Stomach	stomach
5	chr10:21652600-21661800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:21652800-21661800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:21653800-21657400	Weak transcription	Fetal Kidney	kidney
8	chr10:21654000-21656200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:21654000-21656400	Enhancers	Hela-S3	cervix
10	chr10:21654000-21661600	Weak transcription	NHLF	lung
11	chr10:21654000-21661800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:21654000-21662000	Weak transcription	Spleen	Spleen
13	chr10:21654000-21676800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:21654200-21656600	Weak transcription	Fetal Lung	lung
15	chr10:21654200-21656800	Enhancers	A549	lung
16	chr10:21654200-21657600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr10:21654200-21658000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:21654200-21658200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr10:21654200-21661800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr10:21654200-21661800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr10:21654200-21661800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:21654200-21662000	Weak transcription	K562	blood
23	chr10:21654200-21681400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr10:21654400-21657200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:21654400-21657400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr10:21654400-21657400	Weak transcription	Ovary	ovary
27	chr10:21654400-21658000	Weak transcription	Fetal Heart	heart
28	chr10:21654400-21658000	Weak transcription	NH-A	brain
29	chr10:21654400-21658200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:21654400-21658600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr10:21654600-21656600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:21654600-21656800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:21654600-21658000	Weak transcription	Fetal Muscle Leg	muscle
34	chr10:21654600-21662000	Weak transcription	Left Ventricle	heart
35	chr10:21655200-21656200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr10:21655200-21656400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr10:21655200-21657200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:21655200-21657400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr10:21655200-21661600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:21655200-21661600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:21655200-21661600	Weak transcription	NHDF-Ad	bronchial
42	chr10:21655200-21661600	Weak transcription	Osteobl	bone
43	chr10:21655800-21656400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:21655800-21656800	Weak transcription	NHEK	skin
45	chr10:21655800-21657000	Weak transcription	HMEC	breast
46	chr10:21655800-21657400	Weak transcription	HUVEC	blood vessel
47	chr10:21655800-21661200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:21655800-21661600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr10:21656000-21659000	Enhancers	Placenta	Placenta

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