Variant report

Variant	rs58722636
Chromosome Location	chr10:21659955-21659956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21645217..21648028-chr10:21658321..21660402,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11012673	0.91[AMR][1000 genomes]
rs16921779	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16921789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34019318	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs55782349	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56324716	0.87[EUR][1000 genomes]
rs60360051	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61849963	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61849964	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61849974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61849975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61849976	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61851542	0.87[EUR][1000 genomes]
rs7091420	0.83[EUR][1000 genomes]
rs7913116	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21652200-21661200	Weak transcription	Right Atrium	heart
2	chr10:21652600-21661800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:21652800-21661800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:21654000-21661600	Weak transcription	NHLF	lung
5	chr10:21654000-21661800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:21654000-21662000	Weak transcription	Spleen	Spleen
7	chr10:21654000-21676800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:21654200-21661800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:21654200-21661800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:21654200-21661800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:21654200-21662000	Weak transcription	K562	blood
12	chr10:21654200-21681400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:21654600-21662000	Weak transcription	Left Ventricle	heart
14	chr10:21655200-21661600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:21655200-21661600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:21655200-21661600	Weak transcription	NHDF-Ad	bronchial
17	chr10:21655200-21661600	Weak transcription	Osteobl	bone
18	chr10:21655800-21661200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:21655800-21661600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr10:21657400-21661400	Weak transcription	Hela-S3	cervix
21	chr10:21657600-21661600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr10:21657600-21661600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr10:21657800-21661600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:21658200-21661600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:21658200-21661600	Weak transcription	GM12878-XiMat	blood
26	chr10:21658200-21662000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:21658200-21662000	Weak transcription	Ovary	ovary
28	chr10:21658400-21661600	Weak transcription	Fetal Thymus	thymus
29	chr10:21658400-21661800	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr10:21658400-21662000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:21658400-21662000	Weak transcription	Fetal Muscle Trunk	muscle
32	chr10:21659000-21661600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:21659000-21661600	Weak transcription	Fetal Lung	lung
34	chr10:21659000-21661600	Weak transcription	Fetal Muscle Leg	muscle
35	chr10:21659000-21661600	Weak transcription	HMEC	breast
36	chr10:21659000-21661800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr10:21659000-21661800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:21659000-21661800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr10:21659000-21661800	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr10:21659000-21661800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr10:21659000-21661800	Weak transcription	Fetal Kidney	kidney
42	chr10:21659000-21661800	Weak transcription	Placenta	Placenta
43	chr10:21659000-21662000	Weak transcription	Fetal Stomach	stomach
44	chr10:21659200-21660600	Weak transcription	A549	lung
45	chr10:21659200-21661200	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr10:21659200-21661400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:21659200-21661400	Weak transcription	NHEK	skin
48	chr10:21659200-21661600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:21659200-21661600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:21659200-21661600	Weak transcription	NH-A	brain

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