Variant report

Variant	rs16921789
Chromosome Location	chr10:21661487-21661488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11012673	0.91[AMR][1000 genomes]
rs16921726	0.82[CEU][hapmap]
rs16921729	1.00[CEU][hapmap]
rs16921779	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34019318	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs55782349	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56324716	0.87[EUR][1000 genomes]
rs58722636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60360051	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61849963	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61849964	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61849974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61849975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61849976	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61851542	0.87[EUR][1000 genomes]
rs7091420	0.83[EUR][1000 genomes]
rs7913116	0.87[EUR][1000 genomes]
rs7922927	0.82[CEU][hapmap];0.81[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21652600-21661800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:21652800-21661800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:21654000-21661600	Weak transcription	NHLF	lung
4	chr10:21654000-21661800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:21654000-21662000	Weak transcription	Spleen	Spleen
6	chr10:21654000-21676800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:21654200-21661800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr10:21654200-21661800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr10:21654200-21661800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:21654200-21662000	Weak transcription	K562	blood
11	chr10:21654200-21681400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:21654600-21662000	Weak transcription	Left Ventricle	heart
13	chr10:21655200-21661600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:21655200-21661600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:21655200-21661600	Weak transcription	NHDF-Ad	bronchial
16	chr10:21655200-21661600	Weak transcription	Osteobl	bone
17	chr10:21655800-21661600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr10:21657600-21661600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr10:21657600-21661600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:21657800-21661600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:21658200-21661600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:21658200-21661600	Weak transcription	GM12878-XiMat	blood
23	chr10:21658200-21662000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:21658200-21662000	Weak transcription	Ovary	ovary
25	chr10:21658400-21661600	Weak transcription	Fetal Thymus	thymus
26	chr10:21658400-21661800	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr10:21658400-21662000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:21658400-21662000	Weak transcription	Fetal Muscle Trunk	muscle
29	chr10:21659000-21661600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:21659000-21661600	Weak transcription	Fetal Lung	lung
31	chr10:21659000-21661600	Weak transcription	Fetal Muscle Leg	muscle
32	chr10:21659000-21661600	Weak transcription	HMEC	breast
33	chr10:21659000-21661800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr10:21659000-21661800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr10:21659000-21661800	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr10:21659000-21661800	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr10:21659000-21661800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr10:21659000-21661800	Weak transcription	Fetal Kidney	kidney
39	chr10:21659000-21661800	Weak transcription	Placenta	Placenta
40	chr10:21659000-21662000	Weak transcription	Fetal Stomach	stomach
41	chr10:21659200-21661600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:21659200-21661600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr10:21659200-21661600	Weak transcription	NH-A	brain
44	chr10:21659200-21661800	Weak transcription	Fetal Heart	heart
45	chr10:21659400-21661600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:21659400-21661800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr10:21661000-21661800	Enhancers	Primary T cells from cord blood	blood
48	chr10:21661000-21662400	Enhancers	Primary T cells fromperipheralblood	blood
49	chr10:21661200-21661800	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr10:21661200-21661800	Enhancers	Placenta Amnion	Placenta Amnion

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