Variant report

Variant	rs61849964
Chromosome Location	chr10:21654145-21654146
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21647881..21649690-chr10:21653268..21654967,2	K562	blood:
2	chr10:21652515..21654513-chr10:21784528..21786535,3	MCF-7	breast:
3	chr10:21647943..21649942-chr10:21653951..21656428,2	MCF-7	breast:
4	chr10:21653535..21655375-chr10:21660311..21663071,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204682	Chromatin interaction
ENSG00000230109	Chromatin interaction
ENSG00000222071	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11012673	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16921779	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16921789	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34019318	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34891645	0.83[ASN][1000 genomes]
rs55782349	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56324716	0.85[EUR][1000 genomes]
rs58722636	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60360051	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61849963	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61849974	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61849975	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61849976	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61851542	0.85[EUR][1000 genomes]
rs7091420	0.82[EUR][1000 genomes]
rs7913116	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21651000-21655800	Enhancers	HMEC	breast
2	chr10:21651200-21654600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:21651400-21654600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr10:21651800-21654400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr10:21651800-21654600	Enhancers	Fetal Muscle Leg	muscle
6	chr10:21651800-21655200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:21652000-21654200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr10:21652000-21654200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:21652000-21654200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr10:21652000-21654200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr10:21652000-21654200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr10:21652000-21654200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr10:21652000-21654200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr10:21652000-21654200	Enhancers	Fetal Intestine Large	intestine
15	chr10:21652000-21654200	Enhancers	Fetal Lung	lung
16	chr10:21652000-21654400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr10:21652000-21654400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:21652000-21654400	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr10:21652000-21654600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:21652000-21654600	Enhancers	Osteobl	bone
21	chr10:21652000-21655200	Enhancers	NHDF-Ad	bronchial
22	chr10:21652000-21655800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:21652200-21654200	Weak transcription	Lung	lung
24	chr10:21652200-21658000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:21652200-21661200	Weak transcription	Right Atrium	heart
26	chr10:21652400-21654400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr10:21652400-21657000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr10:21652600-21658000	Weak transcription	Fetal Stomach	stomach
29	chr10:21652600-21661800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr10:21652800-21654200	Enhancers	HSMM	muscle
31	chr10:21652800-21654400	Enhancers	Fetal Heart	heart
32	chr10:21652800-21661800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:21653200-21654200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:21653200-21654200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr10:21653200-21655800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr10:21653400-21654200	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr10:21653400-21654200	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr10:21653400-21654200	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr10:21653400-21654200	Enhancers	Brain Anterior Caudate	brain
40	chr10:21653400-21654200	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr10:21653400-21654200	Enhancers	HepG2	liver
42	chr10:21653400-21654400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:21653400-21654400	Enhancers	Ovary	ovary
44	chr10:21653400-21654400	Enhancers	NHEK	skin
45	chr10:21653400-21654600	Enhancers	Left Ventricle	heart
46	chr10:21653600-21654200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:21653600-21654200	Enhancers	K562	blood
48	chr10:21653600-21654400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr10:21653600-21654400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:21653600-21654400	Enhancers	Sigmoid Colon	Sigmoid Colon

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