Variant report

Variant	rs11012673
Chromosome Location	chr10:21644516-21644517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21639391..21642314-chr10:21643297..21645192,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10218879	0.93[EUR][1000 genomes]
rs10218952	0.93[EUR][1000 genomes]
rs10218971	0.93[EUR][1000 genomes]
rs10218986	0.93[EUR][1000 genomes]
rs11012665	0.93[EUR][1000 genomes]
rs12248522	0.95[EUR][1000 genomes]
rs12250778	0.95[EUR][1000 genomes]
rs12256314	0.95[EUR][1000 genomes]
rs16921744	0.93[EUR][1000 genomes]
rs16921779	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16921789	0.91[AMR][1000 genomes]
rs2360046	0.93[EUR][1000 genomes]
rs34019318	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34299719	0.95[EUR][1000 genomes]
rs34891645	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55782349	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58722636	0.91[AMR][1000 genomes]
rs60360051	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61849963	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61849964	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61849974	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61849975	0.91[AMR][1000 genomes]
rs61849976	0.82[AMR][1000 genomes]
rs7080191	0.95[EUR][1000 genomes]
rs7907491	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21639400-21644800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:21639400-21644800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr10:21639600-21644600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:21639600-21644600	Weak transcription	Osteobl	bone
5	chr10:21639600-21650800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:21639600-21650800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:21639600-21652000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:21640600-21644600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:21640800-21648000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:21641600-21650000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:21642600-21644600	Weak transcription	A549	lung
12	chr10:21643800-21645000	Weak transcription	Placenta	Placenta
13	chr10:21644000-21644600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr10:21644200-21644800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:21644400-21644800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:21644400-21644800	Flanking Active TSS	HMEC	breast
17	chr10:21644400-21645000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:21644400-21645200	Flanking Active TSS	NHEK	skin
19	chr10:21644400-21645600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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