Variant report

Variant	rs12256314
Chromosome Location	chr10:21634405-21634406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21627460..21630424-chr10:21634382..21636080,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10218879	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10218952	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10218971	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10218986	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012642	0.89[ASN][1000 genomes]
rs11012644	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11012645	0.89[ASN][1000 genomes]
rs11012646	0.89[ASN][1000 genomes]
rs11012648	0.89[ASN][1000 genomes]
rs11012658	0.89[ASN][1000 genomes]
rs11012665	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012673	0.95[EUR][1000 genomes]
rs12240956	0.89[ASN][1000 genomes]
rs12244309	0.88[CEU][hapmap]
rs12248522	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250778	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359942	0.89[ASN][1000 genomes]
rs13377089	0.89[ASN][1000 genomes]
rs16921726	1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs16921744	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16921779	1.00[CHD][hapmap]
rs2360046	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28476641	0.89[ASN][1000 genomes]
rs34019318	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34299719	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55638725	0.89[ASN][1000 genomes]
rs55672286	0.89[ASN][1000 genomes]
rs60875963	0.89[ASN][1000 genomes]
rs61851539	1.00[ASN][1000 genomes]
rs61851542	1.00[ASN][1000 genomes]
rs7080191	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085637	0.89[ASN][1000 genomes]
rs7090939	1.00[ASN][1000 genomes]
rs7091420	1.00[ASN][1000 genomes]
rs7894995	1.00[ASN][1000 genomes]
rs7900321	0.89[ASN][1000 genomes]
rs7907491	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910000	0.89[ASN][1000 genomes]
rs7913116	1.00[ASN][1000 genomes]
rs7922927	1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9971139	0.89[ASN][1000 genomes]
rs9971348	0.89[ASN][1000 genomes]
rs9971367	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21626000-21638800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:21626000-21638800	Weak transcription	Aorta	Aorta
3	chr10:21626400-21638800	Weak transcription	Right Atrium	heart
4	chr10:21626400-21639200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:21627000-21639000	Weak transcription	NHEK	skin
6	chr10:21627800-21638000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:21633400-21634600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:21633400-21634600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr10:21633400-21634600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:21633400-21635000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr10:21633600-21634800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr10:21634200-21636200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:21634400-21634600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:21634400-21635000	Enhancers	A549	lung

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