Variant report

Variant	rs11012644
Chromosome Location	chr10:21581243-21581244
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21579989..21581824-chr10:21813457..21816260,2	MCF-7	breast:
2	chr10:21580744..21583454-chr10:21586325..21588483,2	K562	blood:
3	chr10:21575135..21577702-chr10:21580493..21582112,2	K562	blood:

Variant related genes	Relation type
ENSG00000180592	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10218879	0.89[ASN][1000 genomes]
rs10218952	0.89[ASN][1000 genomes]
rs10218971	0.89[ASN][1000 genomes]
rs10218986	0.89[ASN][1000 genomes]
rs11012642	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012645	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012646	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012648	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012651	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11012658	1.00[ASN][1000 genomes]
rs11012665	0.89[ASN][1000 genomes]
rs12240956	1.00[ASN][1000 genomes]
rs12248522	0.89[ASN][1000 genomes]
rs12250778	0.89[ASN][1000 genomes]
rs12252084	0.82[JPT][hapmap]
rs12256314	0.89[ASN][1000 genomes]
rs12359942	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377089	1.00[ASN][1000 genomes]
rs16921726	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16921729	0.80[YRI][hapmap]
rs16921744	0.89[ASN][1000 genomes]
rs2360046	0.89[ASN][1000 genomes]
rs28476641	1.00[ASN][1000 genomes]
rs34299719	0.89[ASN][1000 genomes]
rs55638725	1.00[ASN][1000 genomes]
rs55672286	1.00[ASN][1000 genomes]
rs60875963	1.00[ASN][1000 genomes]
rs61851539	0.89[ASN][1000 genomes]
rs61851542	0.89[ASN][1000 genomes]
rs7080191	0.89[ASN][1000 genomes]
rs7085637	1.00[ASN][1000 genomes]
rs7090939	0.89[ASN][1000 genomes]
rs7091420	0.89[ASN][1000 genomes]
rs7894995	0.89[ASN][1000 genomes]
rs7900321	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907491	0.89[ASN][1000 genomes]
rs7910000	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913116	0.89[ASN][1000 genomes]
rs7922927	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9971139	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9971348	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9971367	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2761579	chr10:21554557-21612760	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21564200-21581600	Weak transcription	Right Atrium	heart
2	chr10:21567400-21582800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:21568200-21581600	Weak transcription	Ovary	ovary
4	chr10:21571600-21583000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:21575000-21581800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:21576400-21581800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:21576400-21583200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:21578400-21581800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:21579400-21582600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:21580000-21581600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:21580000-21581800	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:21580000-21583000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:21580000-21583200	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr10:21580200-21582800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:21580400-21582200	Enhancers	Placenta Amnion	Placenta Amnion
16	chr10:21580600-21581600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:21580600-21581800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr10:21580600-21583200	Enhancers	HSMMtube	muscle
19	chr10:21580600-21583600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr10:21580800-21581400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr10:21580800-21581400	Flanking Active TSS	A549	lung
22	chr10:21580800-21581600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr10:21580800-21581600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:21580800-21581600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:21580800-21581600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:21580800-21581600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr10:21580800-21581600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:21580800-21581600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:21580800-21581600	Enhancers	Adipose Nuclei	Adipose
30	chr10:21580800-21581600	Enhancers	HMEC	breast
31	chr10:21580800-21581800	Active TSS	Fetal Lung	lung
32	chr10:21580800-21582000	Enhancers	HSMM	muscle
33	chr10:21580800-21582800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:21580800-21583200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
35	chr10:21580800-21583600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chr10:21580800-21583600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr10:21581000-21581400	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:21581000-21581400	Enhancers	HUVEC	blood vessel
39	chr10:21581000-21581600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:21581000-21581600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr10:21581000-21581600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:21581000-21581600	Flanking Active TSS	NHDF-Ad	bronchial
43	chr10:21581000-21581600	Enhancers	NHEK	skin
44	chr10:21581000-21582400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
45	chr10:21581000-21582400	Flanking Active TSS	Osteobl	bone
46	chr10:21581200-21581400	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr10:21581200-21581400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr10:21581200-21581600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:21581200-21581600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr10:21581200-21581600	Enhancers	Fetal Heart	heart

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