Variant report

Variant	rs11012658
Chromosome Location	chr10:21615981-21615982
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10218879	0.89[ASN][1000 genomes]
rs10218952	0.89[ASN][1000 genomes]
rs10218971	0.89[ASN][1000 genomes]
rs10218986	0.89[ASN][1000 genomes]
rs11012642	1.00[ASN][1000 genomes]
rs11012644	1.00[ASN][1000 genomes]
rs11012645	1.00[ASN][1000 genomes]
rs11012646	1.00[ASN][1000 genomes]
rs11012648	1.00[ASN][1000 genomes]
rs11012665	0.89[ASN][1000 genomes]
rs11814672	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12240956	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12248522	0.89[ASN][1000 genomes]
rs12250778	0.89[ASN][1000 genomes]
rs12256314	0.89[ASN][1000 genomes]
rs12359942	1.00[ASN][1000 genomes]
rs13377089	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16921726	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16921729	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16921744	0.89[ASN][1000 genomes]
rs2360046	0.89[ASN][1000 genomes]
rs28460291	0.93[EUR][1000 genomes]
rs28476641	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34299719	0.89[ASN][1000 genomes]
rs55638725	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55672286	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56324716	0.82[AMR][1000 genomes]
rs57729500	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60558873	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60875963	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61851539	0.89[ASN][1000 genomes]
rs61851542	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7070371	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7080191	0.89[ASN][1000 genomes]
rs7085637	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085642	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7090939	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7091420	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs74120911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7894995	0.89[ASN][1000 genomes]
rs7900321	1.00[ASN][1000 genomes]
rs7907491	0.89[ASN][1000 genomes]
rs7910000	1.00[ASN][1000 genomes]
rs7913116	0.89[ASN][1000 genomes]
rs7922927	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9971139	1.00[ASN][1000 genomes]
rs9971348	1.00[ASN][1000 genomes]
rs9971367	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3440876	chr10:21614046-21616569	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
4	esv3370382	chr10:21614396-21616344	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21608000-21619000	Weak transcription	Lung	lung
2	chr10:21612800-21616000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:21615800-21616200	Enhancers	Placenta	Placenta
4	chr10:21615800-21616400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr10:21615800-21616400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:21615800-21616400	Enhancers	A549	lung
7	chr10:21615800-21616600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr10:21615800-21616600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:21615800-21616600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr10:21615800-21616600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr10:21615800-21616800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr10:21615800-21616800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:21615800-21616800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:21615800-21616800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr10:21615800-21616800	Enhancers	Placenta Amnion	Placenta Amnion
16	chr10:21615800-21617000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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