Variant report

Variant	rs7070371
Chromosome Location	chr10:21612637-21612638
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11012656	0.89[ASN][1000 genomes]
rs11012658	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11814672	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12240956	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12241514	0.81[ASN][1000 genomes]
rs12244309	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12259952	0.81[ASN][1000 genomes]
rs13376927	0.87[ASN][1000 genomes]
rs13377089	0.83[EUR][1000 genomes]
rs16921717	0.92[ASN][1000 genomes]
rs16921721	0.92[ASN][1000 genomes]
rs16921726	0.82[CEU][hapmap];0.94[GIH][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs16921729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28460291	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28476641	0.85[EUR][1000 genomes]
rs55638725	0.85[EUR][1000 genomes]
rs55672286	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57729500	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60558873	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60875963	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61055947	0.87[ASN][1000 genomes]
rs61142377	0.87[ASN][1000 genomes]
rs7085637	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7085642	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7092545	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs74120911	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7894995	0.87[EUR][1000 genomes]
rs7905484	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7922927	1.00[ASW][hapmap];0.82[CEU][hapmap];0.88[TSI][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2761579	chr10:21554557-21612760	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21607800-21615800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr10:21608000-21619000	Weak transcription	Lung	lung
3	chr10:21608800-21615800	Weak transcription	A549	lung

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