Variant report

Variant	rs11814672
Chromosome Location	chr10:21605662-21605663
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21569047..21570661-chr10:21604700..21607594,2	MCF-7	breast:
2	chr10:21605101..21606906-chr10:21812546..21814495,2	K562	blood:

Variant related genes	Relation type
ENSG00000180592	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11012658	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12240956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13377089	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16921717	0.82[ASN][1000 genomes]
rs16921721	0.82[ASN][1000 genomes]
rs16921726	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16921729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28460291	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28476641	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55638725	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55672286	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57729500	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60558873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60875963	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7070371	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7085637	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7085642	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs74120911	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7922927	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2761579	chr10:21554557-21612760	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21604000-21605800	Enhancers	Right Ventricle	heart
2	chr10:21605200-21606800	Weak transcription	NHEK	skin
3	chr10:21605200-21607600	Weak transcription	Lung	lung
4	chr10:21605200-21607800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:21605400-21606600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:21605400-21606800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:21605400-21606800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:21605400-21606800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:21605400-21606800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:21605400-21606800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr10:21605400-21606800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:21605400-21606800	Weak transcription	NHDF-Ad	bronchial
13	chr10:21605400-21606800	Weak transcription	Osteobl	bone
14	chr10:21605400-21607000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr10:21605400-21607000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:21605400-21607000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr10:21605400-21607000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr10:21605400-21607000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr10:21605400-21607000	Weak transcription	Adipose Nuclei	Adipose
20	chr10:21605400-21607000	Weak transcription	Fetal Muscle Leg	muscle
21	chr10:21605400-21607000	Weak transcription	Fetal Stomach	stomach
22	chr10:21605400-21607000	Weak transcription	Fetal Thymus	thymus
23	chr10:21605400-21607000	Weak transcription	Right Atrium	heart
24	chr10:21605400-21607000	Weak transcription	HSMM	muscle
25	chr10:21605400-21607000	Weak transcription	NH-A	brain
26	chr10:21605400-21607200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:21605400-21607200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr10:21605400-21607200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr10:21605400-21607200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr10:21605400-21607200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr10:21605400-21607200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr10:21605400-21607200	Weak transcription	Fetal Kidney	kidney
33	chr10:21605400-21607200	Weak transcription	Ovary	ovary
34	chr10:21605400-21607400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr10:21605400-21607400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr10:21605400-21607400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr10:21605400-21607400	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr10:21605400-21607600	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr10:21605400-21607600	Weak transcription	Fetal Lung	lung
40	chr10:21605400-21607600	Weak transcription	Fetal Muscle Trunk	muscle
41	chr10:21605400-21607600	Weak transcription	Placenta	Placenta
42	chr10:21605400-21607600	Weak transcription	HUVEC	blood vessel
43	chr10:21605400-21607600	Weak transcription	K562	blood
44	chr10:21605400-21607800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr10:21605400-21608000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr10:21605600-21606000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:21605600-21606800	Weak transcription	A549	lung
48	chr10:21605600-21607000	Weak transcription	NHLF	lung
49	chr10:21605600-21607200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr10:21605600-21607200	Weak transcription	Fetal Heart	heart

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