Variant report

Variant	rs16921721
Chromosome Location	chr10:21603187-21603188
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21601939..21603985-chr10:22012323..22013912,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11012656	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11814672	0.82[ASN][1000 genomes]
rs12241514	0.88[ASN][1000 genomes]
rs12244309	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12259952	0.88[ASN][1000 genomes]
rs13376927	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13376997	0.86[ASN][1000 genomes]
rs16921717	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16921726	0.84[GIH][hapmap]
rs16921729	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs28460291	0.92[ASN][1000 genomes]
rs57729500	0.92[ASN][1000 genomes]
rs60558873	0.92[ASN][1000 genomes]
rs61055947	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61142377	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7070371	0.92[ASN][1000 genomes]
rs7085642	0.84[ASN][1000 genomes]
rs7092545	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs74120911	0.84[ASN][1000 genomes]
rs7905484	1.00[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2761579	chr10:21554557-21612760	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21601400-21605400	Enhancers	Placenta	Placenta
2	chr10:21601600-21604400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:21601800-21603600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:21601800-21604200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:21601800-21604600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:21601800-21605400	Enhancers	Ovary	ovary
7	chr10:21602400-21604800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:21602600-21603400	Enhancers	GM12878-XiMat	blood
9	chr10:21602600-21603600	Enhancers	A549	lung
10	chr10:21602600-21603800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:21602600-21605000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:21602600-21605000	Enhancers	NHLF	lung
13	chr10:21602600-21605400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:21602600-21605400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:21602600-21605400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:21602600-21605400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr10:21602600-21605400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr10:21602600-21605400	Enhancers	Fetal Muscle Trunk	muscle
19	chr10:21602600-21605400	Enhancers	Fetal Muscle Leg	muscle
20	chr10:21602600-21605400	Enhancers	Fetal Stomach	stomach
21	chr10:21602600-21605600	Enhancers	Fetal Heart	heart
22	chr10:21602800-21603200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:21602800-21603200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:21602800-21603200	Bivalent Enhancer	HepG2	liver
25	chr10:21602800-21603400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr10:21602800-21603600	Enhancers	Right Ventricle	heart
27	chr10:21602800-21604600	Enhancers	Fetal Intestine Small	intestine
28	chr10:21602800-21604800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr10:21602800-21605000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr10:21602800-21605000	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr10:21602800-21605000	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr10:21602800-21605000	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr10:21602800-21605200	Enhancers	NHEK	skin
34	chr10:21602800-21605400	Enhancers	H1 Cell Line	embryonic stem cell
35	chr10:21602800-21605400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr10:21602800-21605400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr10:21602800-21605400	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr10:21602800-21605400	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr10:21602800-21605400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:21602800-21605400	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr10:21602800-21605400	Enhancers	Fetal Lung	lung
42	chr10:21602800-21605400	Enhancers	Left Ventricle	heart
43	chr10:21602800-21605400	Enhancers	Placenta Amnion	Placenta Amnion
44	chr10:21602800-21605400	Enhancers	Right Atrium	heart
45	chr10:21602800-21605400	Enhancers	HSMMtube	muscle
46	chr10:21602800-21605400	Enhancers	HUVEC	blood vessel
47	chr10:21602800-21605400	Enhancers	NH-A	brain
48	chr10:21603000-21603400	Enhancers	H9 Cell Line	embryonic stem cell
49	chr10:21603000-21603400	Enhancers	Small Intestine	intestine
50	chr10:21603000-21603600	Enhancers	Rectal Smooth Muscle	rectum

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