Variant report

Variant	rs7905484
Chromosome Location	chr10:21622582-21622583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21618964..21620909-chr10:21622515..21624166,2	MCF-7	breast:
2	chr10:21622452..21625359-chr10:21813661..21815173,2	K562	blood:

Variant related genes	Relation type
ENSG00000180592	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10218878	0.83[AMR][1000 genomes]
rs10218911	0.83[ASN][1000 genomes]
rs10828235	0.82[AMR][1000 genomes]
rs10828236	0.85[ASN][1000 genomes]
rs11012667	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12244309	0.82[JPT][hapmap]
rs1527044	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16921729	1.00[CHB][hapmap]
rs56324716	0.83[ASN][1000 genomes]
rs6482176	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6482177	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7092545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71491180	0.94[ASN][1000 genomes]
rs7895221	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7897408	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7898836	0.85[ASN][1000 genomes]
rs7909938	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7914447	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7920204	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7923649	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21616600-21624000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:21616600-21625400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:21616800-21623000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:21616800-21623200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:21616800-21623400	Weak transcription	K562	blood
6	chr10:21616800-21624000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr10:21616800-21625600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:21617600-21624200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr10:21619200-21624000	Weak transcription	NH-A	brain
10	chr10:21619200-21624200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:21619400-21623800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:21619400-21624000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:21619400-21624000	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:21619400-21624000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr10:21619800-21622600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:21619800-21623000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:21619800-21623000	Weak transcription	NHLF	lung
18	chr10:21619800-21623200	Weak transcription	NHDF-Ad	bronchial
19	chr10:21619800-21623200	Weak transcription	NHEK	skin
20	chr10:21619800-21623400	Enhancers	A549	lung
21	chr10:21619800-21623400	Weak transcription	Hela-S3	cervix
22	chr10:21619800-21623400	Weak transcription	HMEC	breast
23	chr10:21619800-21624000	Weak transcription	Osteobl	bone
24	chr10:21619800-21624200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:21620000-21624800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:21620200-21622800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr10:21620200-21623400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr10:21620200-21625200	Weak transcription	Adipose Nuclei	Adipose
29	chr10:21620200-21625200	Weak transcription	Lung	lung
30	chr10:21621000-21623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:21621000-21624000	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr10:21621600-21623400	Weak transcription	HUVEC	blood vessel
33	chr10:21621800-21622600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr10:21621800-21627800	Enhancers	Placenta	Placenta

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