Variant report

Variant	rs1527044
Chromosome Location	chr10:21625572-21625573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21623994..21626043-chr10:21635914..21638277,2	MCF-7	breast:
2	chr10:21598231..21598820-chr10:21625115..21625929,2	MCF-7	breast:
3	chr10:21624338..21627195-chr10:21803332..21806134,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10218878	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10828235	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11012667	0.88[AMR][1000 genomes]
rs6482176	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6482177	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7092545	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7098605	1.00[ASN][1000 genomes]
rs7895221	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7897408	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905484	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7909938	0.82[AMR][1000 genomes]
rs7914447	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7920204	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21616800-21625600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:21621800-21627800	Enhancers	Placenta	Placenta
3	chr10:21622600-21626000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:21623000-21626000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:21623000-21626000	Enhancers	NHLF	lung
6	chr10:21623000-21626800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:21623200-21626000	Enhancers	NHDF-Ad	bronchial
8	chr10:21623400-21625600	Enhancers	HUVEC	blood vessel
9	chr10:21623400-21625800	Enhancers	Placenta Amnion	Placenta Amnion
10	chr10:21623400-21626000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr10:21623800-21626000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:21623800-21626000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr10:21623800-21627000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr10:21624000-21625600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr10:21624000-21625600	Enhancers	HSMM	muscle
16	chr10:21624000-21625800	Enhancers	Stomach Smooth Muscle	stomach
17	chr10:21624000-21626000	Enhancers	Fetal Muscle Trunk	muscle
18	chr10:21624200-21625600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:21624200-21626000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:21624200-21626000	Enhancers	K562	blood
21	chr10:21624200-21626800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:21624200-21627800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:21624400-21625600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:21624800-21626600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr10:21625000-21625600	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr10:21625000-21625600	Enhancers	HepG2	liver
27	chr10:21625000-21626000	Enhancers	H1 Cell Line	embryonic stem cell
28	chr10:21625000-21626000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:21625000-21626000	Enhancers	Esophagus	oesophagus
30	chr10:21625000-21626000	Enhancers	Fetal Muscle Leg	muscle
31	chr10:21625000-21626800	Enhancers	Right Ventricle	heart
32	chr10:21625200-21625800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr10:21625200-21625800	Flanking Active TSS	Fetal Heart	heart
34	chr10:21625200-21625800	Enhancers	Lung	lung
35	chr10:21625200-21626000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:21625200-21626000	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr10:21625200-21626000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr10:21625200-21626000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:21625200-21626000	Enhancers	Adipose Nuclei	Adipose
40	chr10:21625200-21626000	Flanking Active TSS	A549	lung
41	chr10:21625200-21626000	Flanking Active TSS	HSMMtube	muscle
42	chr10:21625200-21626000	Flanking Active TSS	NHEK	skin
43	chr10:21625200-21626400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr10:21625400-21625800	Enhancers	H9 Cell Line	embryonic stem cell
45	chr10:21625400-21625800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr10:21625400-21625800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr10:21625400-21625800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:21625400-21625800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr10:21625400-21625800	Enhancers	Fetal Lung	lung
50	chr10:21625400-21625800	Enhancers	Fetal Stomach	stomach

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