Variant report

Variant	rs7895221
Chromosome Location	chr10:21617599-21617600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10218878	0.80[AMR][1000 genomes]
rs10218911	0.89[ASN][1000 genomes]
rs10828236	0.91[ASN][1000 genomes]
rs11012667	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1527044	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2039027	0.82[ASN][1000 genomes]
rs2039028	0.82[ASN][1000 genomes]
rs56324716	0.90[ASN][1000 genomes]
rs6482176	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482177	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7092545	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71491180	1.00[ASN][1000 genomes]
rs7897408	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7898836	0.91[ASN][1000 genomes]
rs7905484	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7909938	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7914447	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920204	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923649	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21608000-21619000	Weak transcription	Lung	lung
2	chr10:21616200-21617600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr10:21616600-21618600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:21616600-21618600	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:21616600-21624000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:21616600-21625400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:21616800-21618800	Enhancers	A549	lung
8	chr10:21616800-21619000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:21616800-21619200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:21616800-21623000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:21616800-21623200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:21616800-21623400	Weak transcription	K562	blood
13	chr10:21616800-21624000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr10:21616800-21625600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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