Variant report

Variant	rs7920204
Chromosome Location	chr10:21625975-21625976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21623994..21626043-chr10:21635914..21638277,2	MCF-7	breast:
2	chr10:21624338..21627195-chr10:21803332..21806134,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10218878	0.88[AMR][1000 genomes]
rs10218911	0.89[ASN][1000 genomes]
rs10828235	0.84[AMR][1000 genomes]
rs10828236	0.91[ASN][1000 genomes]
rs11012667	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1527044	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16921729	1.00[CHB][hapmap]
rs2039027	0.82[ASN][1000 genomes]
rs2039028	0.82[ASN][1000 genomes]
rs56324716	0.90[ASN][1000 genomes]
rs6482176	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482177	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7068408	0.83[GIH][hapmap]
rs7092545	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71491180	1.00[ASN][1000 genomes]
rs7895221	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897408	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7898040	0.82[GIH][hapmap]
rs7898836	0.91[ASN][1000 genomes]
rs7905484	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7909938	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7914447	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923649	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21621800-21627800	Enhancers	Placenta	Placenta
2	chr10:21622600-21626000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:21623000-21626000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:21623000-21626000	Enhancers	NHLF	lung
5	chr10:21623000-21626800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:21623200-21626000	Enhancers	NHDF-Ad	bronchial
7	chr10:21623400-21626000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:21623800-21626000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:21623800-21626000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr10:21623800-21627000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr10:21624000-21626000	Enhancers	Fetal Muscle Trunk	muscle
12	chr10:21624200-21626000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:21624200-21626000	Enhancers	K562	blood
14	chr10:21624200-21626800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:21624200-21627800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:21624800-21626600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:21625000-21626000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr10:21625000-21626000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:21625000-21626000	Enhancers	Esophagus	oesophagus
20	chr10:21625000-21626000	Enhancers	Fetal Muscle Leg	muscle
21	chr10:21625000-21626800	Enhancers	Right Ventricle	heart
22	chr10:21625200-21626000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:21625200-21626000	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr10:21625200-21626000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr10:21625200-21626000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:21625200-21626000	Enhancers	Adipose Nuclei	Adipose
27	chr10:21625200-21626000	Flanking Active TSS	A549	lung
28	chr10:21625200-21626000	Flanking Active TSS	HSMMtube	muscle
29	chr10:21625200-21626000	Flanking Active TSS	NHEK	skin
30	chr10:21625200-21626400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr10:21625400-21626000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr10:21625400-21626000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:21625400-21626000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
34	chr10:21625400-21626000	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr10:21625400-21626000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr10:21625400-21626000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr10:21625400-21626000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:21625400-21626000	Enhancers	Aorta	Aorta
39	chr10:21625400-21626000	Enhancers	Colon Smooth Muscle	Colon
40	chr10:21625400-21626000	Enhancers	Gastric	stomach
41	chr10:21625400-21626000	Enhancers	Ovary	ovary
42	chr10:21625400-21626000	Enhancers	Pancreas	Pancrea
43	chr10:21625400-21626000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
44	chr10:21625400-21626000	Flanking Active TSS	Hela-S3	cervix
45	chr10:21625400-21626000	Flanking Active TSS	HMEC	breast
46	chr10:21625400-21626400	Enhancers	Right Atrium	heart
47	chr10:21625400-21626800	Enhancers	Left Ventricle	heart
48	chr10:21625600-21626000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
49	chr10:21625600-21626000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:21625600-21626000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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