Variant report

Variant	rs10828235
Chromosome Location	chr10:21631189-21631190
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10218878	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10218911	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10828236	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11012667	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1527044	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6482176	0.80[AMR][1000 genomes]
rs7092545	0.83[AMR][1000 genomes]
rs7098605	1.00[ASN][1000 genomes]
rs71491180	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7897408	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7898836	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7905484	0.82[AMR][1000 genomes]
rs7920204	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10828235	NEBL-AS1	cis	Nerve Tibial	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21626000-21638800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:21626000-21638800	Weak transcription	Aorta	Aorta
3	chr10:21626400-21632200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:21626400-21638800	Weak transcription	Right Atrium	heart
5	chr10:21626400-21639200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:21627000-21639000	Weak transcription	NHEK	skin
7	chr10:21627200-21632600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:21627800-21638000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:21629800-21631800	Weak transcription	Hela-S3	cervix
10	chr10:21630600-21631600	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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