Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21629419..21631045-chr10:21637686..21640023,3	MCF-7	breast:
2	chr10:21627460..21630424-chr10:21634382..21636080,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10218878	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10828235	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10828236	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11012667	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11594245	0.92[CHD][hapmap]
rs12244309	0.82[JPT][hapmap]
rs16921729	1.00[CHB][hapmap]
rs56324716	0.80[ASN][1000 genomes]
rs6482176	0.89[ASN][1000 genomes]
rs6482177	0.83[ASN][1000 genomes]
rs7068408	1.00[CHD][hapmap];0.88[GIH][hapmap]
rs7081480	0.92[CHD][hapmap]
rs7092545	1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs71491180	0.89[ASN][1000 genomes]
rs7895221	0.89[ASN][1000 genomes]
rs7897408	0.81[AMR][1000 genomes]
rs7898040	1.00[CHD][hapmap];0.88[GIH][hapmap]
rs7898836	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7905484	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7909938	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7914447	0.89[ASN][1000 genomes]
rs7920204	0.89[ASN][1000 genomes]
rs7923649	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10218911	NEBL-AS1	cis	Nerve Tibial	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21626000-21638800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:21626000-21638800	Weak transcription	Aorta	Aorta
3	chr10:21626400-21632200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:21626400-21638800	Weak transcription	Right Atrium	heart
5	chr10:21626400-21639200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:21627000-21639000	Weak transcription	NHEK	skin
7	chr10:21627200-21632600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:21627800-21638000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:21628200-21630600	Enhancers	A549	lung
10	chr10:21629200-21630200	Enhancers	Placenta	Placenta
11	chr10:21629800-21631800	Weak transcription	Hela-S3	cervix

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