Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10828238	0.81[ASN][1000 genomes]
rs11012680	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs11012681	0.81[ASN][1000 genomes]
rs11594245	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597239	0.81[EUR][1000 genomes]
rs11597707	0.81[EUR][1000 genomes]
rs12245880	0.81[ASN][1000 genomes]
rs12413399	0.81[EUR][1000 genomes]
rs16921771	0.88[CEU][hapmap];1.00[GIH][hapmap]
rs1927242	1.00[ASN][1000 genomes]
rs2039029	0.87[EUR][1000 genomes]
rs2209804	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34297119	0.81[EUR][1000 genomes]
rs35841043	0.81[EUR][1000 genomes]
rs4381272	0.81[ASN][1000 genomes]
rs4448595	0.81[ASN][1000 genomes]
rs55773472	0.84[EUR][1000 genomes]
rs55953944	0.81[EUR][1000 genomes]
rs58809874	0.81[ASN][1000 genomes]
rs6415965	0.87[EUR][1000 genomes]
rs7068408	0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7069583	0.90[GIH][hapmap]
rs7071130	0.87[EUR][1000 genomes]
rs7079617	0.87[EUR][1000 genomes]
rs7080007	0.87[EUR][1000 genomes]
rs7086407	0.81[ASN][1000 genomes]
rs7089695	0.81[EUR][1000 genomes]
rs7098870	0.87[EUR][1000 genomes]
rs72793067	0.81[EUR][1000 genomes]
rs72793075	0.81[EUR][1000 genomes]
rs72793077	0.89[EUR][1000 genomes]
rs72793079	0.81[EUR][1000 genomes]
rs7893639	0.87[EUR][1000 genomes]
rs7898040	0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21654000-21676800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:21654200-21681400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:21662400-21666000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:21662400-21666200	Enhancers	A549	lung
5	chr10:21662400-21668000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:21662400-21668200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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