Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21645217..21648028-chr10:21658321..21660402,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10828238	0.81[ASN][1000 genomes]
rs11012680	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs11012681	0.81[ASN][1000 genomes]
rs11594245	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs11597239	0.82[AMR][1000 genomes]
rs11597707	0.82[AMR][1000 genomes]
rs12245880	0.81[ASN][1000 genomes]
rs16921771	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2209804	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34297119	0.82[AMR][1000 genomes]
rs4381272	0.81[ASN][1000 genomes]
rs4448595	0.81[ASN][1000 genomes]
rs58809874	0.81[ASN][1000 genomes]
rs7068408	0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7081480	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7084906	0.96[EUR][1000 genomes]
rs7086407	0.81[ASN][1000 genomes]
rs72793067	0.82[AMR][1000 genomes]
rs7898040	0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7913490	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21639600-21650800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:21639600-21650800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:21639600-21652000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:21640800-21648000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:21641600-21650000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:21645200-21648000	Weak transcription	A549	lung
7	chr10:21645200-21650800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:21645200-21651000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:21645200-21651000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:21645400-21650800	Weak transcription	NHEK	skin
11	chr10:21645400-21651000	Weak transcription	HMEC	breast
12	chr10:21645600-21651000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:21645800-21647400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:21646000-21647000	Weak transcription	Placenta	Placenta
15	chr10:21646200-21650600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:21646400-21651800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:21646800-21652000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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