Variant report

Variant	rs7893639
Chromosome Location	chr10:21644741-21644742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21639391..21642314-chr10:21643297..21645192,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11012680	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11594245	0.87[CEU][hapmap];0.90[GIH][hapmap];0.88[EUR][1000 genomes]
rs11595231	0.91[EUR][1000 genomes]
rs11597239	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597707	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413399	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16921771	0.88[CEU][hapmap];1.00[GIH][hapmap]
rs2039029	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2209804	0.87[CEU][hapmap]
rs34297119	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35841043	0.94[EUR][1000 genomes]
rs55773472	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55953944	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6415965	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069583	1.00[CHD][hapmap];0.90[GIH][hapmap];0.82[TSI][hapmap]
rs7071130	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079617	1.00[EUR][1000 genomes]
rs7080007	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081480	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes]
rs7084906	0.82[AMR][1000 genomes]
rs7089695	0.94[EUR][1000 genomes]
rs7098870	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72793061	0.88[EUR][1000 genomes]
rs72793067	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793075	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793077	0.85[EUR][1000 genomes]
rs72793079	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793086	0.82[EUR][1000 genomes]
rs7913490	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21639400-21644800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:21639400-21644800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr10:21639600-21650800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:21639600-21650800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr10:21639600-21652000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:21640800-21648000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:21641600-21650000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:21643800-21645000	Weak transcription	Placenta	Placenta
9	chr10:21644200-21644800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:21644400-21644800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:21644400-21644800	Flanking Active TSS	HMEC	breast
12	chr10:21644400-21645000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:21644400-21645200	Flanking Active TSS	NHEK	skin
14	chr10:21644400-21645600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:21644600-21645000	Enhancers	Osteobl	bone
16	chr10:21644600-21645200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr10:21644600-21645200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:21644600-21645200	Enhancers	Placenta Amnion	Placenta Amnion
19	chr10:21644600-21645200	Enhancers	A549	lung

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