Variant report

Variant	rs35841043
Chromosome Location	chr10:21623311-21623312
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21618964..21620909-chr10:21622515..21624166,2	MCF-7	breast:
2	chr10:21622452..21625359-chr10:21813661..21815173,2	K562	blood:

Variant related genes	Relation type
ENSG00000180592	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11012606	1.00[ASN][1000 genomes]
rs11012680	0.86[EUR][1000 genomes]
rs11594245	0.94[EUR][1000 genomes]
rs11595231	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597239	1.00[EUR][1000 genomes]
rs11597707	1.00[EUR][1000 genomes]
rs12413399	1.00[EUR][1000 genomes]
rs12762379	1.00[ASN][1000 genomes]
rs12770644	1.00[ASN][1000 genomes]
rs12779845	1.00[ASN][1000 genomes]
rs16921724	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16921796	0.84[EUR][1000 genomes]
rs2039029	0.94[EUR][1000 genomes]
rs34297119	1.00[EUR][1000 genomes]
rs3940961	1.00[ASN][1000 genomes]
rs4515870	1.00[ASN][1000 genomes]
rs55773472	0.97[EUR][1000 genomes]
rs55953944	1.00[EUR][1000 genomes]
rs58335572	1.00[ASN][1000 genomes]
rs59781699	0.84[EUR][1000 genomes]
rs6415965	0.94[EUR][1000 genomes]
rs6482173	1.00[ASN][1000 genomes]
rs7071130	0.94[EUR][1000 genomes]
rs7074362	1.00[ASN][1000 genomes]
rs7079617	0.94[EUR][1000 genomes]
rs7080007	0.94[EUR][1000 genomes]
rs7081480	0.81[EUR][1000 genomes]
rs7089695	1.00[EUR][1000 genomes]
rs7098870	0.94[EUR][1000 genomes]
rs72793050	0.80[EUR][1000 genomes]
rs72793061	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793067	1.00[EUR][1000 genomes]
rs72793075	1.00[EUR][1000 genomes]
rs72793077	0.91[EUR][1000 genomes]
rs72793079	1.00[EUR][1000 genomes]
rs72793086	0.87[EUR][1000 genomes]
rs72793090	0.84[EUR][1000 genomes]
rs72798577	1.00[ASN][1000 genomes]
rs7893639	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21616600-21624000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:21616600-21625400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:21616800-21623400	Weak transcription	K562	blood
4	chr10:21616800-21624000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:21616800-21625600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:21617600-21624200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr10:21619200-21624000	Weak transcription	NH-A	brain
8	chr10:21619200-21624200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:21619400-21623800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr10:21619400-21624000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr10:21619400-21624000	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:21619400-21624000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr10:21619800-21623400	Enhancers	A549	lung
14	chr10:21619800-21623400	Weak transcription	Hela-S3	cervix
15	chr10:21619800-21623400	Weak transcription	HMEC	breast
16	chr10:21619800-21624000	Weak transcription	Osteobl	bone
17	chr10:21619800-21624200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:21620000-21624800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:21620200-21623400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr10:21620200-21625200	Weak transcription	Adipose Nuclei	Adipose
21	chr10:21620200-21625200	Weak transcription	Lung	lung
22	chr10:21621000-21624000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr10:21621600-21623400	Weak transcription	HUVEC	blood vessel
24	chr10:21621800-21627800	Enhancers	Placenta	Placenta
25	chr10:21622600-21625400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:21622600-21626000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:21623000-21624000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:21623000-21625200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:21623000-21626000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:21623000-21626000	Enhancers	NHLF	lung
31	chr10:21623000-21626800	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr10:21623200-21624000	Weak transcription	HepG2	liver
33	chr10:21623200-21624200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr10:21623200-21625200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr10:21623200-21625200	Enhancers	NHEK	skin
36	chr10:21623200-21625400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr10:21623200-21626000	Enhancers	NHDF-Ad	bronchial

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