Variant report

Variant	rs3940961
Chromosome Location	chr10:21568617-21568618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21567595..21569178-chr6:17394921..17396812,2	MCF-7	breast:
2	chr10:21566105..21568881-chr10:21783134..21785349,2	MCF-7	breast:
3	chr10:21566287..21568979-chr10:21785002..21786704,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204682	Chromatin interaction
ENSG00000222071	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11012606	1.00[ASN][1000 genomes]
rs11595231	1.00[ASN][1000 genomes]
rs12762379	1.00[ASN][1000 genomes]
rs12770644	1.00[ASN][1000 genomes]
rs12779845	1.00[ASN][1000 genomes]
rs16921724	1.00[ASN][1000 genomes]
rs35732149	0.91[EUR][1000 genomes]
rs35841043	1.00[ASN][1000 genomes]
rs4515870	1.00[ASN][1000 genomes]
rs56988582	0.81[EUR][1000 genomes]
rs58335572	1.00[ASN][1000 genomes]
rs6482173	1.00[ASN][1000 genomes]
rs66527303	0.91[EUR][1000 genomes]
rs7074362	1.00[ASN][1000 genomes]
rs72793061	1.00[ASN][1000 genomes]
rs72798577	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv971871	chr10:21460392-21579987	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2761579	chr10:21554557-21612760	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21561800-21574200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:21562800-21578000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:21563200-21574400	Weak transcription	Hela-S3	cervix
4	chr10:21564200-21581600	Weak transcription	Right Atrium	heart
5	chr10:21564600-21569200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:21566400-21570600	Enhancers	A549	lung
7	chr10:21567000-21571600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:21567000-21576600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr10:21567400-21582800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:21567800-21569400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:21567800-21569800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:21567800-21570400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr10:21567800-21570600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr10:21567800-21571600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:21567800-21572200	Enhancers	Placenta	Placenta
16	chr10:21568000-21569000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:21568000-21570600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:21568200-21568800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr10:21568200-21568800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr10:21568200-21569000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr10:21568200-21569200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:21568200-21570000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:21568200-21570600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:21568200-21578200	Weak transcription	Fetal Lung	lung
25	chr10:21568200-21579200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:21568200-21580400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr10:21568200-21581600	Weak transcription	Ovary	ovary
28	chr10:21568400-21568800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr10:21568400-21568800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr10:21568400-21568800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr10:21568400-21568800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr10:21568400-21569800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:21568400-21573800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr10:21568600-21569800	Weak transcription	NHDF-Ad	bronchial

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