Variant report

Variant	rs12770644
Chromosome Location	chr10:21521476-21521477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21521446..21521946-chr19:36527653..36528209,2	Hela-S3	cervix:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10400156	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10828225	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11012606	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012608	0.84[EUR][1000 genomes]
rs11012613	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11595231	1.00[ASN][1000 genomes]
rs12762123	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12762293	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12762379	1.00[ASN][1000 genomes]
rs12779845	1.00[ASN][1000 genomes]
rs1482899	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16921724	1.00[ASN][1000 genomes]
rs35199186	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35841043	1.00[ASN][1000 genomes]
rs3940961	1.00[ASN][1000 genomes]
rs58335572	1.00[ASN][1000 genomes]
rs60959763	0.83[EUR][1000 genomes]
rs6482173	1.00[ASN][1000 genomes]
rs67484996	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7069644	0.82[CEU][hapmap];0.81[YRI][hapmap]
rs7074362	1.00[ASN][1000 genomes]
rs7090954	0.84[AMR][1000 genomes]
rs7092555	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71486488	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72793061	1.00[ASN][1000 genomes]
rs72798577	1.00[ASN][1000 genomes]
rs7894121	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7896926	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7905100	0.85[EUR][1000 genomes]
rs7910610	0.83[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv508573	chr10:21457005-21525646	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv971871	chr10:21460392-21579987	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21502600-21522000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:21520800-21521800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:21521000-21522000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr10:21521400-21522000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
5	chr10:21521400-21522400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr10:21521400-21525400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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