Variant report

Variant	rs58335572
Chromosome Location	chr10:21559171-21559172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21462928..21463909-chr10:21558639..21559534,4	MCF-7	breast:
2	chr10:21459772..21460734-chr10:21558586..21559444,2	MCF-7	breast:
3	chr10:21366590..21368424-chr10:21558245..21559647,10	K562	blood:
4	chr10:21367383..21368237-chr10:21558616..21559569,6	MCF-7	breast:
5	chr10:21367493..21368136-chr10:21558880..21559977,3	MCF-7	breast:
6	chr10:21451631..21454371-chr10:21557815..21559378,2	MCF-7	breast:
7	chr10:21462514..21467355-chr10:21556681..21560290,5	MCF-7	breast:
8	chr10:21557377..21560359-chr10:21813156..21816034,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11012606	1.00[ASN][1000 genomes]
rs11595231	1.00[ASN][1000 genomes]
rs12354832	0.87[AFR][1000 genomes]
rs12762379	1.00[ASN][1000 genomes]
rs12770644	1.00[ASN][1000 genomes]
rs12779845	1.00[ASN][1000 genomes]
rs16921724	1.00[ASN][1000 genomes]
rs35841043	1.00[ASN][1000 genomes]
rs3940961	1.00[ASN][1000 genomes]
rs4515870	1.00[ASN][1000 genomes]
rs6482173	1.00[ASN][1000 genomes]
rs7074362	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793061	1.00[ASN][1000 genomes]
rs72798577	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv971871	chr10:21460392-21579987	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2761579	chr10:21554557-21612760	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21550200-21559800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:21550200-21560200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr10:21550400-21559800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr10:21550400-21560200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr10:21551200-21564000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:21553400-21567000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:21554800-21561400	Weak transcription	Hela-S3	cervix
8	chr10:21554800-21561400	Weak transcription	K562	blood
9	chr10:21555600-21559800	Weak transcription	A549	lung
10	chr10:21557400-21559800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr10:21558200-21562400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:21558200-21567600	Weak transcription	Ovary	ovary
13	chr10:21559000-21559600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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