Variant report

Variant	rs12762379
Chromosome Location	chr10:21559884-21559885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11012606	1.00[ASN][1000 genomes]
rs11595231	1.00[ASN][1000 genomes]
rs12770644	1.00[ASN][1000 genomes]
rs12779845	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16921724	1.00[ASN][1000 genomes]
rs35841043	1.00[ASN][1000 genomes]
rs3940961	1.00[ASN][1000 genomes]
rs4515870	1.00[ASN][1000 genomes]
rs58335572	1.00[ASN][1000 genomes]
rs6482173	1.00[ASN][1000 genomes]
rs7074362	1.00[ASN][1000 genomes]
rs72793061	1.00[ASN][1000 genomes]
rs72798577	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv971871	chr10:21460392-21579987	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2761579	chr10:21554557-21612760	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21550200-21560200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr10:21550400-21560200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:21551200-21564000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:21553400-21567000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:21554800-21561400	Weak transcription	Hela-S3	cervix
6	chr10:21554800-21561400	Weak transcription	K562	blood
7	chr10:21558200-21562400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:21558200-21567600	Weak transcription	Ovary	ovary
9	chr10:21559600-21560600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:21559800-21560000	ZNF genes & repeats	A549	lung
11	chr10:21559800-21560200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr10:21559800-21560200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:21559800-21560400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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