Variant report

Variant	rs16921724
Chromosome Location	chr10:21603465-21603466
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21601939..21603985-chr10:22012323..22013912,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11012606	1.00[ASN][1000 genomes]
rs11595231	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597239	0.81[EUR][1000 genomes]
rs11597707	0.81[EUR][1000 genomes]
rs12413399	0.81[EUR][1000 genomes]
rs12762379	1.00[ASN][1000 genomes]
rs12770644	1.00[ASN][1000 genomes]
rs12779845	1.00[ASN][1000 genomes]
rs34297119	0.81[EUR][1000 genomes]
rs35841043	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3940961	1.00[ASN][1000 genomes]
rs4515870	1.00[ASN][1000 genomes]
rs55953944	0.81[EUR][1000 genomes]
rs58335572	1.00[ASN][1000 genomes]
rs6482173	1.00[ASN][1000 genomes]
rs7074362	1.00[ASN][1000 genomes]
rs7089695	0.81[EUR][1000 genomes]
rs72793050	0.80[EUR][1000 genomes]
rs72793061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793067	0.81[EUR][1000 genomes]
rs72793075	0.81[EUR][1000 genomes]
rs72793079	0.81[EUR][1000 genomes]
rs72798577	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2761579	chr10:21554557-21612760	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21601400-21605400	Enhancers	Placenta	Placenta
2	chr10:21601600-21604400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:21601800-21603600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:21601800-21604200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:21601800-21604600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:21601800-21605400	Enhancers	Ovary	ovary
7	chr10:21602400-21604800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:21602600-21603600	Enhancers	A549	lung
9	chr10:21602600-21603800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:21602600-21605000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:21602600-21605000	Enhancers	NHLF	lung
12	chr10:21602600-21605400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:21602600-21605400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:21602600-21605400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:21602600-21605400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr10:21602600-21605400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr10:21602600-21605400	Enhancers	Fetal Muscle Trunk	muscle
18	chr10:21602600-21605400	Enhancers	Fetal Muscle Leg	muscle
19	chr10:21602600-21605400	Enhancers	Fetal Stomach	stomach
20	chr10:21602600-21605600	Enhancers	Fetal Heart	heart
21	chr10:21602800-21603600	Enhancers	Right Ventricle	heart
22	chr10:21602800-21604600	Enhancers	Fetal Intestine Small	intestine
23	chr10:21602800-21604800	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr10:21602800-21605000	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr10:21602800-21605000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr10:21602800-21605000	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr10:21602800-21605000	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr10:21602800-21605200	Enhancers	NHEK	skin
29	chr10:21602800-21605400	Enhancers	H1 Cell Line	embryonic stem cell
30	chr10:21602800-21605400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr10:21602800-21605400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:21602800-21605400	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr10:21602800-21605400	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr10:21602800-21605400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:21602800-21605400	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr10:21602800-21605400	Enhancers	Fetal Lung	lung
37	chr10:21602800-21605400	Enhancers	Left Ventricle	heart
38	chr10:21602800-21605400	Enhancers	Placenta Amnion	Placenta Amnion
39	chr10:21602800-21605400	Enhancers	Right Atrium	heart
40	chr10:21602800-21605400	Enhancers	HSMMtube	muscle
41	chr10:21602800-21605400	Enhancers	HUVEC	blood vessel
42	chr10:21602800-21605400	Enhancers	NH-A	brain
43	chr10:21603000-21603600	Enhancers	Rectal Smooth Muscle	rectum
44	chr10:21603000-21603800	Enhancers	Fetal Brain Male	brain
45	chr10:21603000-21604000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chr10:21603000-21604000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr10:21603000-21604200	Enhancers	Muscle Satellite Cultured Cells	--
48	chr10:21603000-21604200	Weak transcription	Fetal Intestine Large	intestine
49	chr10:21603000-21604200	Enhancers	Stomach Smooth Muscle	stomach
50	chr10:21603000-21604200	Enhancers	Hela-S3	cervix

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