Variant report

Variant	rs72793050
Chromosome Location	chr10:21613443-21613444
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11597239	0.80[EUR][1000 genomes]
rs11597707	0.80[EUR][1000 genomes]
rs12246574	1.00[ASN][1000 genomes]
rs12264555	1.00[ASN][1000 genomes]
rs12413399	0.80[EUR][1000 genomes]
rs16921724	0.80[EUR][1000 genomes]
rs16921794	0.81[EUR][1000 genomes]
rs16921795	0.81[EUR][1000 genomes]
rs34297119	0.80[EUR][1000 genomes]
rs35732149	1.00[ASN][1000 genomes]
rs35841043	0.80[EUR][1000 genomes]
rs36133057	0.93[AMR][1000 genomes]
rs55953944	0.80[EUR][1000 genomes]
rs56988582	1.00[ASN][1000 genomes]
rs66527303	1.00[ASN][1000 genomes]
rs7068359	1.00[ASN][1000 genomes]
rs7089695	0.80[EUR][1000 genomes]
rs7092209	1.00[ASN][1000 genomes]
rs7094045	1.00[ASN][1000 genomes]
rs72793067	0.80[EUR][1000 genomes]
rs72793075	0.80[EUR][1000 genomes]
rs72793079	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21607800-21615800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr10:21608000-21619000	Weak transcription	Lung	lung
3	chr10:21608800-21615800	Weak transcription	A549	lung
4	chr10:21612800-21616000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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