Variant report

Variant	rs7092209
Chromosome Location	chr10:21605178-21605179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21569047..21570661-chr10:21604700..21607594,2	MCF-7	breast:
2	chr10:21605101..21606906-chr10:21812546..21814495,2	K562	blood:

Variant related genes	Relation type
ENSG00000180592	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12246574	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264555	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35732149	1.00[ASN][1000 genomes]
rs56988582	1.00[ASN][1000 genomes]
rs66527303	1.00[ASN][1000 genomes]
rs7068359	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069583	0.94[ASW][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap]
rs7094045	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793050	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2761579	chr10:21554557-21612760	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21601400-21605400	Enhancers	Placenta	Placenta
2	chr10:21601800-21605400	Enhancers	Ovary	ovary
3	chr10:21602600-21605400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:21602600-21605400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:21602600-21605400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:21602600-21605400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr10:21602600-21605400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr10:21602600-21605400	Enhancers	Fetal Muscle Trunk	muscle
9	chr10:21602600-21605400	Enhancers	Fetal Muscle Leg	muscle
10	chr10:21602600-21605400	Enhancers	Fetal Stomach	stomach
11	chr10:21602600-21605600	Enhancers	Fetal Heart	heart
12	chr10:21602800-21605200	Enhancers	NHEK	skin
13	chr10:21602800-21605400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr10:21602800-21605400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:21602800-21605400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:21602800-21605400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr10:21602800-21605400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr10:21602800-21605400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:21602800-21605400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr10:21602800-21605400	Enhancers	Fetal Lung	lung
21	chr10:21602800-21605400	Enhancers	Left Ventricle	heart
22	chr10:21602800-21605400	Enhancers	Placenta Amnion	Placenta Amnion
23	chr10:21602800-21605400	Enhancers	Right Atrium	heart
24	chr10:21602800-21605400	Enhancers	HSMMtube	muscle
25	chr10:21602800-21605400	Enhancers	HUVEC	blood vessel
26	chr10:21602800-21605400	Enhancers	NH-A	brain
27	chr10:21603000-21605200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:21603000-21605200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:21603000-21605400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:21603000-21605400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:21603000-21605400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:21603000-21605400	Enhancers	Colon Smooth Muscle	Colon
33	chr10:21603000-21605400	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr10:21603000-21605400	Enhancers	Spleen	Spleen
35	chr10:21603000-21605400	Enhancers	HMEC	breast
36	chr10:21603000-21605400	Enhancers	NHDF-Ad	bronchial
37	chr10:21603200-21605400	Enhancers	Adipose Nuclei	Adipose
38	chr10:21603400-21605200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:21603600-21605400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:21603600-21605400	Flanking Active TSS	A549	lung
41	chr10:21603800-21605200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr10:21604000-21605200	Enhancers	Lung	lung
43	chr10:21604000-21605200	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr10:21604000-21605400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:21604000-21605400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr10:21604000-21605600	Enhancers	Rectal Smooth Muscle	rectum
47	chr10:21604000-21605800	Enhancers	Right Ventricle	heart
48	chr10:21604200-21605200	Enhancers	Fetal Intestine Large	intestine
49	chr10:21604200-21605200	Flanking Active TSS	Hela-S3	cervix
50	chr10:21604200-21605400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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