Variant report

Variant	rs7069583
Chromosome Location	chr10:21624652-21624653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21619468..21621244-chr10:21623343..21625012,2	K562	blood:
2	chr10:21623994..21626043-chr10:21635914..21638277,2	MCF-7	breast:
3	chr10:21622452..21625359-chr10:21813661..21815173,2	K562	blood:
4	chr10:21624338..21627195-chr10:21803332..21806134,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180592	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11012664	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596761	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12098545	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252792	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12255988	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262600	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413576	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1527043	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16921771	0.90[GIH][hapmap]
rs4448594	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56023910	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079617	1.00[ASN][1000 genomes]
rs7080719	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081480	0.90[GIH][hapmap]
rs7089695	1.00[ASN][1000 genomes]
rs7092209	0.94[ASW][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap]
rs7898226	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905935	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923263	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21616600-21625400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:21616800-21625600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:21620000-21624800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:21620200-21625200	Weak transcription	Adipose Nuclei	Adipose
5	chr10:21620200-21625200	Weak transcription	Lung	lung
6	chr10:21621800-21627800	Enhancers	Placenta	Placenta
7	chr10:21622600-21625400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:21622600-21626000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:21623000-21625200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:21623000-21626000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:21623000-21626000	Enhancers	NHLF	lung
12	chr10:21623000-21626800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr10:21623200-21625200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:21623200-21625200	Enhancers	NHEK	skin
15	chr10:21623200-21625400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:21623200-21626000	Enhancers	NHDF-Ad	bronchial
17	chr10:21623400-21625400	Enhancers	HMEC	breast
18	chr10:21623400-21625600	Enhancers	HUVEC	blood vessel
19	chr10:21623400-21625800	Enhancers	Placenta Amnion	Placenta Amnion
20	chr10:21623400-21626000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr10:21623800-21625200	Enhancers	HSMMtube	muscle
22	chr10:21623800-21626000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:21623800-21626000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr10:21623800-21627000	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr10:21624000-21625000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:21624000-21625200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr10:21624000-21625200	Enhancers	Fetal Heart	heart
28	chr10:21624000-21625400	Enhancers	NH-A	brain
29	chr10:21624000-21625400	Enhancers	Osteobl	bone
30	chr10:21624000-21625600	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr10:21624000-21625600	Enhancers	HSMM	muscle
32	chr10:21624000-21625800	Enhancers	Stomach Smooth Muscle	stomach
33	chr10:21624000-21626000	Enhancers	Fetal Muscle Trunk	muscle
34	chr10:21624200-21625000	Weak transcription	HepG2	liver
35	chr10:21624200-21625400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr10:21624200-21625600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:21624200-21626000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:21624200-21626000	Enhancers	K562	blood
39	chr10:21624200-21626800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr10:21624200-21627800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:21624400-21625200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr10:21624400-21625400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr10:21624400-21625400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr10:21624400-21625400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr10:21624400-21625400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr10:21624400-21625400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr10:21624400-21625400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr10:21624400-21625400	Weak transcription	Aorta	Aorta
49	chr10:21624400-21625400	Weak transcription	Fetal Lung	lung
50	chr10:21624400-21625400	Weak transcription	Fetal Stomach	stomach

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