Variant report

Variant	rs7905935
Chromosome Location	chr10:21623156-21623157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21618964..21620909-chr10:21622515..21624166,2	MCF-7	breast:
2	chr10:21622452..21625359-chr10:21813661..21815173,2	K562	blood:

Variant related genes	Relation type
ENSG00000180592	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11012664	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596761	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12098545	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252792	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12255988	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262600	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413576	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1527043	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4448594	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56023910	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069583	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079617	1.00[ASN][1000 genomes]
rs7080719	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089695	1.00[ASN][1000 genomes]
rs7898226	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923263	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21616600-21624000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:21616600-21625400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:21616800-21623200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:21616800-21623400	Weak transcription	K562	blood
5	chr10:21616800-21624000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:21616800-21625600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:21617600-21624200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:21619200-21624000	Weak transcription	NH-A	brain
9	chr10:21619200-21624200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:21619400-21623800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr10:21619400-21624000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:21619400-21624000	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:21619400-21624000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:21619800-21623200	Weak transcription	NHDF-Ad	bronchial
15	chr10:21619800-21623200	Weak transcription	NHEK	skin
16	chr10:21619800-21623400	Enhancers	A549	lung
17	chr10:21619800-21623400	Weak transcription	Hela-S3	cervix
18	chr10:21619800-21623400	Weak transcription	HMEC	breast
19	chr10:21619800-21624000	Weak transcription	Osteobl	bone
20	chr10:21619800-21624200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:21620000-21624800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:21620200-21623400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr10:21620200-21625200	Weak transcription	Adipose Nuclei	Adipose
24	chr10:21620200-21625200	Weak transcription	Lung	lung
25	chr10:21621000-21623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:21621000-21624000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr10:21621600-21623400	Weak transcription	HUVEC	blood vessel
28	chr10:21621800-21627800	Enhancers	Placenta	Placenta
29	chr10:21622600-21625400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:21622600-21626000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:21622800-21623200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:21623000-21624000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:21623000-21625200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:21623000-21626000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:21623000-21626000	Enhancers	NHLF	lung
36	chr10:21623000-21626800	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links