Variant report

Variant	rs12413576
Chromosome Location	chr10:21618792-21618793
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11012664	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596761	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12098545	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252792	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12255988	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262600	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1527043	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4448594	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56023910	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069583	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079617	1.00[ASN][1000 genomes]
rs7080719	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089695	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7898226	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905935	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923263	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21608000-21619000	Weak transcription	Lung	lung
2	chr10:21616600-21624000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:21616600-21625400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:21616800-21618800	Enhancers	A549	lung
5	chr10:21616800-21619000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:21616800-21619200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:21616800-21623000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:21616800-21623200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:21616800-21623400	Weak transcription	K562	blood
10	chr10:21616800-21624000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr10:21616800-21625600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr10:21617600-21624200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr10:21618200-21619000	Enhancers	NHLF	lung
14	chr10:21618200-21619600	Enhancers	Adipose Nuclei	Adipose
15	chr10:21618600-21619200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:21618600-21619200	Enhancers	HUVEC	blood vessel
17	chr10:21618600-21619400	Enhancers	Fetal Muscle Leg	muscle
18	chr10:21618600-21619800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:21618600-21619800	Enhancers	Placenta	Placenta
20	chr10:21618600-21619800	Enhancers	Hela-S3	cervix
21	chr10:21618600-21619800	Enhancers	NHDF-Ad	bronchial
22	chr10:21618600-21619800	Enhancers	Osteobl	bone
23	chr10:21618600-21620400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr10:21618600-21621800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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