Variant report

Variant	rs7898226
Chromosome Location	chr10:21628352-21628353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21627460..21630424-chr10:21634382..21636080,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11012664	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596761	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12098545	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252792	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12255988	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262600	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413576	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1527043	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16921771	0.90[GIH][hapmap]
rs4448594	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56023910	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069583	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079617	1.00[ASN][1000 genomes]
rs7080719	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081480	0.90[GIH][hapmap]
rs7089695	1.00[ASN][1000 genomes]
rs7092209	0.82[ASW][hapmap];0.91[TSI][hapmap]
rs7092545	0.82[MEX][hapmap]
rs7905935	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923263	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21625800-21629200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:21626000-21628600	Weak transcription	NHDF-Ad	bronchial
3	chr10:21626000-21629000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:21626000-21629000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:21626000-21629000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:21626000-21629200	Weak transcription	Osteobl	bone
7	chr10:21626000-21638800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:21626000-21638800	Weak transcription	Aorta	Aorta
9	chr10:21626400-21629200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:21626400-21632200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:21626400-21638800	Weak transcription	Right Atrium	heart
12	chr10:21626400-21639200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:21626800-21628600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:21626800-21629000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:21626800-21629200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:21627000-21629000	Weak transcription	Hela-S3	cervix
17	chr10:21627000-21629000	Weak transcription	HMEC	breast
18	chr10:21627000-21639000	Weak transcription	NHEK	skin
19	chr10:21627200-21632600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:21627800-21629200	Weak transcription	Placenta	Placenta
21	chr10:21627800-21638000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:21628200-21630600	Enhancers	A549	lung

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