Variant report

Variant	rs7089695
Chromosome Location	chr10:21634667-21634668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21627460..21630424-chr10:21634382..21636080,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11012664	1.00[ASN][1000 genomes]
rs11012680	0.86[EUR][1000 genomes]
rs11594245	0.87[CEU][hapmap];0.94[EUR][1000 genomes]
rs11595231	0.97[EUR][1000 genomes]
rs11596761	1.00[ASN][1000 genomes]
rs11597239	1.00[EUR][1000 genomes]
rs11597707	1.00[EUR][1000 genomes]
rs12098545	1.00[ASN][1000 genomes]
rs12252792	1.00[ASN][1000 genomes]
rs12255988	1.00[ASN][1000 genomes]
rs12262600	1.00[ASN][1000 genomes]
rs12413399	1.00[EUR][1000 genomes]
rs12413576	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1527043	1.00[ASN][1000 genomes]
rs16921724	0.81[EUR][1000 genomes]
rs16921771	0.88[CEU][hapmap]
rs16921796	0.84[EUR][1000 genomes]
rs2039029	0.94[EUR][1000 genomes]
rs2209804	0.87[CEU][hapmap]
rs34297119	1.00[EUR][1000 genomes]
rs35841043	1.00[EUR][1000 genomes]
rs4448594	1.00[ASN][1000 genomes]
rs55773472	0.97[EUR][1000 genomes]
rs55953944	1.00[EUR][1000 genomes]
rs56023910	1.00[ASN][1000 genomes]
rs59781699	0.84[EUR][1000 genomes]
rs6415965	0.94[EUR][1000 genomes]
rs7069583	1.00[ASN][1000 genomes]
rs7071130	0.94[EUR][1000 genomes]
rs7079617	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080007	0.94[EUR][1000 genomes]
rs7080719	1.00[ASN][1000 genomes]
rs7081480	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7098870	0.94[EUR][1000 genomes]
rs72793050	0.80[EUR][1000 genomes]
rs72793061	0.94[EUR][1000 genomes]
rs72793067	1.00[EUR][1000 genomes]
rs72793075	1.00[EUR][1000 genomes]
rs72793077	0.91[EUR][1000 genomes]
rs72793079	1.00[EUR][1000 genomes]
rs72793086	0.87[EUR][1000 genomes]
rs72793090	0.84[EUR][1000 genomes]
rs7893639	0.94[EUR][1000 genomes]
rs7898226	1.00[ASN][1000 genomes]
rs7905935	1.00[ASN][1000 genomes]
rs7923263	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21626000-21638800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:21626000-21638800	Weak transcription	Aorta	Aorta
3	chr10:21626400-21638800	Weak transcription	Right Atrium	heart
4	chr10:21626400-21639200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:21627000-21639000	Weak transcription	NHEK	skin
6	chr10:21627800-21638000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:21633400-21635000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr10:21633600-21634800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr10:21634200-21636200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:21634400-21635000	Enhancers	A549	lung
11	chr10:21634600-21638600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:21634600-21638800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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