Variant report

Variant	rs7071130
Chromosome Location	chr10:21640076-21640077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21639391..21642314-chr10:21643297..21645192,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11012680	0.92[EUR][1000 genomes]
rs11594245	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs11595231	0.91[EUR][1000 genomes]
rs11597239	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597707	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413399	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039029	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2209804	0.82[CEU][hapmap]
rs34297119	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35841043	0.94[EUR][1000 genomes]
rs55773472	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55953944	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6415965	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079617	1.00[EUR][1000 genomes]
rs7080007	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081480	0.87[EUR][1000 genomes]
rs7089695	0.94[EUR][1000 genomes]
rs7098870	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72793061	0.88[EUR][1000 genomes]
rs72793067	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793075	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793077	0.85[EUR][1000 genomes]
rs72793079	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793086	0.82[EUR][1000 genomes]
rs7893639	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21638600-21640200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:21638800-21640200	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr10:21638800-21641600	Enhancers	Placenta	Placenta
4	chr10:21639400-21644800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:21639400-21644800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:21639600-21640400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:21639600-21643800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr10:21639600-21644000	Weak transcription	HMEC	breast
9	chr10:21639600-21644200	Weak transcription	NHEK	skin
10	chr10:21639600-21644600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:21639600-21644600	Weak transcription	Osteobl	bone
12	chr10:21639600-21650800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:21639600-21650800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr10:21639600-21652000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:21639800-21640200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:21639800-21644000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:21639800-21644000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:21640000-21640800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:21640000-21641200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:21640000-21641800	Weak transcription	A549	lung

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