Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr10:21661464-21662541	A549	lung:	n/a	chr10:21661704-21661713
2	BHLHE40	chr10:21661908-21662428	K562	blood:	n/a	n/a
3	TCF12	chr10:21661630-21662489	A549	lung:	n/a	n/a
4	NFIC	chr10:21661703-21662443	SK-N-SH	brain:	n/a	n/a
5	USF1	chr10:21661930-21662442	SK-N-SH_RA	brain:	n/a	chr10:21662277-21662288
6	POLR2A	chr10:21661716-21662547	PFSK-1	brain:	n/a	n/a
7	USF1	chr10:21661860-21662431	A549	lung:	n/a	chr10:21662277-21662288
8	KAP1	chr10:21661825-21662414	HEK293	kidney:	n/a	n/a
9	TCF12	chr10:21661701-21662479	SK-N-SH	brain:	n/a	n/a
10	USF1	chr10:21662031-21662484	SK-N-SH	brain:	n/a	chr10:21662277-21662288
11	POLR2A	chr10:21661730-21662443	PFSK-1	brain:	n/a	n/a
12	POLR2A	chr10:21661776-21662475	HUVEC	blood vessel:	n/a	n/a
13	MAX	chr10:21661553-21662469	A549	lung:	n/a	chr10:21661704-21661713
14	USF1	chr10:21661979-21662429	A549	lung:	n/a	chr10:21662277-21662288
15	POLR2A	chr10:21661949-21662404	Gliobla	brain:	n/a	n/a
16	MAX	chr10:21661870-21662442	SK-N-SH	brain:	n/a	n/a
17	GATA3	chr10:21661585-21662439	A549	lung:	n/a	n/a
18	POLR2A	chr10:21661891-21662470	U87	brain:	n/a	n/a
19	YY1	chr10:21661913-21662404	A549	lung:	n/a	n/a
20	MAZ	chr10:21661623-21662464	IMR90	lung:	n/a	chr10:21661704-21661713
21	YY1	chr10:21661893-21662433	SK-N-SH	brain:	n/a	n/a
22	POLR2A	chr10:21661885-21662476	U87	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000230109	TF binding region

rSNPs within LD-proxies of this variant (count:24)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21654000-21676800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:21654200-21681400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:21661600-21662800	Enhancers	Fetal Thymus	thymus
4	chr10:21662200-21662800	Enhancers	Primary T cells from cord blood	blood
5	chr10:21662200-21663200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:21662400-21662600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr10:21662400-21662600	Enhancers	Dnd41	blood
8	chr10:21662400-21662600	Enhancers	NHLF	lung
9	chr10:21662400-21663000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:21662400-21663400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:21662400-21663400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:21662400-21663600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:21662400-21663800	Enhancers	Osteobl	bone
14	chr10:21662400-21664200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:21662400-21664200	Enhancers	NHDF-Ad	bronchial
16	chr10:21662400-21666000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:21662400-21666200	Enhancers	A549	lung
18	chr10:21662400-21668000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:21662400-21668200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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