Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21675580..21678521-chr10:21678649..21680738,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11594245	0.82[EUR][1000 genomes]
rs11595231	0.84[EUR][1000 genomes]
rs11597239	0.87[EUR][1000 genomes]
rs11597707	0.87[EUR][1000 genomes]
rs12413399	0.87[EUR][1000 genomes]
rs16921794	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16921795	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16921796	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2039029	0.82[EUR][1000 genomes]
rs34297119	0.87[EUR][1000 genomes]
rs35841043	0.87[EUR][1000 genomes]
rs55773472	0.84[EUR][1000 genomes]
rs55953944	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59781699	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6415965	0.82[EUR][1000 genomes]
rs7071130	0.82[EUR][1000 genomes]
rs7079617	0.82[EUR][1000 genomes]
rs7080007	0.82[EUR][1000 genomes]
rs7089695	0.87[EUR][1000 genomes]
rs7098870	0.82[EUR][1000 genomes]
rs72793061	0.81[EUR][1000 genomes]
rs72793067	0.87[EUR][1000 genomes]
rs72793075	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72793079	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72793090	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7893639	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21654200-21681400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:21675000-21681000	Weak transcription	A549	lung
3	chr10:21676800-21680400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:21677600-21679400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:21677600-21680200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr10:21678000-21679200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr10:21678000-21679400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:21678000-21683000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:21678200-21679200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:21678200-21679400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:21678200-21679400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:21678200-21679400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr10:21678200-21681400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:21678200-21683000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:21678200-21692000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:21678800-21680400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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