Variant report

Variant	rs16921794
Chromosome Location	chr10:21683204-21683205
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16921795	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16921796	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55953944	0.91[AMR][1000 genomes]
rs59781699	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72793050	0.81[EUR][1000 genomes]
rs72793075	0.91[AMR][1000 genomes]
rs72793086	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72793090	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21678200-21692000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:21680200-21687200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:21680400-21683400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr10:21680400-21684200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:21681600-21687800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr10:21682600-21685600	Weak transcription	Hela-S3	cervix
7	chr10:21683000-21683400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:21683000-21683400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:21683000-21683400	ZNF genes & repeats	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links