Variant report

Variant	rs2039029
Chromosome Location	chr10:21639081-21639082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21629419..21631045-chr10:21637686..21640023,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11012680	0.92[EUR][1000 genomes]
rs11594245	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11595231	0.91[EUR][1000 genomes]
rs11597239	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597707	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12255988	0.83[AFR][1000 genomes]
rs12413399	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2209804	1.00[CEU][hapmap]
rs34297119	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35841043	0.94[EUR][1000 genomes]
rs55773472	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55953944	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6415965	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071130	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079617	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7080007	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080719	0.86[AFR][1000 genomes]
rs7081480	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs7089695	0.94[EUR][1000 genomes]
rs7098870	1.00[EUR][1000 genomes]
rs72793061	0.88[EUR][1000 genomes]
rs72793067	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793075	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793077	0.85[EUR][1000 genomes]
rs72793079	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793086	0.82[EUR][1000 genomes]
rs7893639	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21626400-21639200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:21637400-21639600	Enhancers	Fetal Muscle Leg	muscle
3	chr10:21638000-21639200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:21638000-21639600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:21638000-21639600	Enhancers	Fetal Lung	lung
6	chr10:21638200-21639600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:21638400-21639600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:21638600-21639600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:21638600-21639600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr10:21638600-21639600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:21638600-21639600	Flanking Active TSS	A549	lung
12	chr10:21638600-21639600	Enhancers	NHLF	lung
13	chr10:21638600-21640000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:21638600-21640200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:21638800-21639200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:21638800-21639200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr10:21638800-21639200	Enhancers	HSMMtube	muscle
18	chr10:21638800-21639400	Enhancers	H1 Cell Line	embryonic stem cell
19	chr10:21638800-21639400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:21638800-21639400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr10:21638800-21639400	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr10:21638800-21639400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr10:21638800-21639400	Flanking Active TSS	Fetal Heart	heart
24	chr10:21638800-21639600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr10:21638800-21639600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr10:21638800-21639600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:21638800-21639600	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr10:21638800-21639600	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr10:21638800-21639600	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr10:21638800-21639600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:21638800-21639600	Enhancers	Muscle Satellite Cultured Cells	--
32	chr10:21638800-21639600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr10:21638800-21639600	Enhancers	Aorta	Aorta
34	chr10:21638800-21639600	Enhancers	Colon Smooth Muscle	Colon
35	chr10:21638800-21639600	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr10:21638800-21639600	Enhancers	Gastric	stomach
37	chr10:21638800-21639600	Enhancers	Left Ventricle	heart
38	chr10:21638800-21639600	Enhancers	Placenta Amnion	Placenta Amnion
39	chr10:21638800-21639600	Enhancers	Rectal Smooth Muscle	rectum
40	chr10:21638800-21639600	Enhancers	Right Atrium	heart
41	chr10:21638800-21639600	Bivalent Enhancer	HepG2	liver
42	chr10:21638800-21639600	Enhancers	HMEC	breast
43	chr10:21638800-21639600	Enhancers	NH-A	brain
44	chr10:21638800-21639600	Enhancers	Osteobl	bone
45	chr10:21638800-21639800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:21638800-21639800	Enhancers	Fetal Intestine Large	intestine
47	chr10:21638800-21639800	Enhancers	Ovary	ovary
48	chr10:21638800-21639800	Enhancers	Stomach Smooth Muscle	stomach
49	chr10:21638800-21640000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr10:21638800-21640000	Enhancers	Fetal Stomach	stomach

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