Variant report

Variant	rs6482177
Chromosome Location	chr10:21621449-21621450
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10218878	0.84[AMR][1000 genomes]
rs10218911	0.83[ASN][1000 genomes]
rs10828236	0.86[ASN][1000 genomes]
rs11012667	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1527044	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16921729	1.00[CHB][hapmap]
rs56324716	0.85[ASN][1000 genomes]
rs6482176	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7092545	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71491180	0.94[ASN][1000 genomes]
rs7895221	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7897408	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7898836	0.86[ASN][1000 genomes]
rs7905484	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7909938	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7914447	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7920204	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7923649	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21616600-21624000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:21616600-21625400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:21616800-21623000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:21616800-21623200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:21616800-21623400	Weak transcription	K562	blood
6	chr10:21616800-21624000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr10:21616800-21625600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:21617600-21624200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr10:21618600-21621800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:21619200-21624000	Weak transcription	NH-A	brain
11	chr10:21619200-21624200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:21619400-21623800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:21619400-21624000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:21619400-21624000	Weak transcription	Fetal Muscle Leg	muscle
15	chr10:21619400-21624000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:21619800-21621600	Enhancers	HUVEC	blood vessel
17	chr10:21619800-21621800	Weak transcription	Placenta	Placenta
18	chr10:21619800-21622600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:21619800-21623000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:21619800-21623000	Weak transcription	NHLF	lung
21	chr10:21619800-21623200	Weak transcription	NHDF-Ad	bronchial
22	chr10:21619800-21623200	Weak transcription	NHEK	skin
23	chr10:21619800-21623400	Enhancers	A549	lung
24	chr10:21619800-21623400	Weak transcription	Hela-S3	cervix
25	chr10:21619800-21623400	Weak transcription	HMEC	breast
26	chr10:21619800-21624000	Weak transcription	Osteobl	bone
27	chr10:21619800-21624200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:21620000-21624800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:21620200-21622800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:21620200-21623400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr10:21620200-21625200	Weak transcription	Adipose Nuclei	Adipose
32	chr10:21620200-21625200	Weak transcription	Lung	lung
33	chr10:21621000-21623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:21621000-21624000	Weak transcription	Muscle Satellite Cultured Cells	--

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