Variant report

Variant	rs56324716
Chromosome Location	chr10:21626406-21626407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21626401..21627117-chr10:21783915..21784551,2	MCF-7	breast:
2	chr10:21624338..21627195-chr10:21803332..21806134,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10218879	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10218911	0.80[ASN][1000 genomes]
rs10828236	0.82[ASN][1000 genomes]
rs11012658	0.82[AMR][1000 genomes]
rs11012667	0.90[ASN][1000 genomes]
rs16921779	0.87[EUR][1000 genomes]
rs16921789	0.87[EUR][1000 genomes]
rs2039027	0.85[ASN][1000 genomes]
rs2039028	0.85[ASN][1000 genomes]
rs55782349	0.85[EUR][1000 genomes]
rs58722636	0.87[EUR][1000 genomes]
rs61849963	0.85[EUR][1000 genomes]
rs61849964	0.85[EUR][1000 genomes]
rs61849974	0.87[EUR][1000 genomes]
rs61849975	0.87[EUR][1000 genomes]
rs61849976	0.85[EUR][1000 genomes]
rs61851539	0.92[EUR][1000 genomes]
rs61851542	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6482176	0.90[ASN][1000 genomes]
rs6482177	0.85[ASN][1000 genomes]
rs7085637	0.82[AMR][1000 genomes]
rs7085642	0.82[AMR][1000 genomes]
rs7090939	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7091420	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7092545	0.90[ASN][1000 genomes]
rs71491180	0.90[ASN][1000 genomes]
rs74120911	0.82[AMR][1000 genomes]
rs7895221	0.90[ASN][1000 genomes]
rs7898836	0.82[ASN][1000 genomes]
rs7905484	0.83[ASN][1000 genomes]
rs7907491	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7909938	0.82[ASN][1000 genomes]
rs7913116	1.00[EUR][1000 genomes]
rs7914447	0.90[ASN][1000 genomes]
rs7920204	0.90[ASN][1000 genomes]
rs7923649	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21621800-21627800	Enhancers	Placenta	Placenta
2	chr10:21623000-21626800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:21623800-21627000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr10:21624200-21626800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:21624200-21627800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:21624800-21626600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:21625000-21626800	Enhancers	Right Ventricle	heart
8	chr10:21625400-21626800	Enhancers	Left Ventricle	heart
9	chr10:21625800-21626800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:21625800-21626800	Enhancers	Fetal Heart	heart
11	chr10:21625800-21626800	Enhancers	NH-A	brain
12	chr10:21625800-21629200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr10:21626000-21626600	Enhancers	A549	lung
14	chr10:21626000-21626800	Enhancers	HepG2	liver
15	chr10:21626000-21627000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr10:21626000-21627000	Enhancers	Hela-S3	cervix
17	chr10:21626000-21627000	Enhancers	HMEC	breast
18	chr10:21626000-21627000	Enhancers	NHEK	skin
19	chr10:21626000-21627200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:21626000-21627600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:21626000-21628600	Weak transcription	NHDF-Ad	bronchial
22	chr10:21626000-21629000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:21626000-21629000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:21626000-21629000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:21626000-21629200	Weak transcription	Osteobl	bone
26	chr10:21626000-21638800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr10:21626000-21638800	Weak transcription	Aorta	Aorta
28	chr10:21626200-21626600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:21626400-21629200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr10:21626400-21632200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr10:21626400-21638800	Weak transcription	Right Atrium	heart
32	chr10:21626400-21639200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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