Variant report

Variant	rs61851542
Chromosome Location	chr10:21627648-21627649
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21626682..21628254-chr10:21631781..21633550,2	K562	blood:
2	chr10:21627460..21630424-chr10:21634382..21636080,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10218879	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10218952	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10218971	1.00[ASN][1000 genomes]
rs10218986	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11012642	0.89[ASN][1000 genomes]
rs11012644	0.89[ASN][1000 genomes]
rs11012645	0.89[ASN][1000 genomes]
rs11012646	0.89[ASN][1000 genomes]
rs11012648	0.89[ASN][1000 genomes]
rs11012658	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11012665	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12240956	0.89[ASN][1000 genomes]
rs12248522	1.00[ASN][1000 genomes]
rs12250778	1.00[ASN][1000 genomes]
rs12256314	1.00[ASN][1000 genomes]
rs12359942	0.89[ASN][1000 genomes]
rs13377089	0.89[ASN][1000 genomes]
rs16921726	0.89[ASN][1000 genomes]
rs16921744	1.00[ASN][1000 genomes]
rs16921779	0.87[EUR][1000 genomes]
rs16921789	0.87[EUR][1000 genomes]
rs2360046	1.00[ASN][1000 genomes]
rs28476641	0.89[ASN][1000 genomes]
rs34299719	1.00[ASN][1000 genomes]
rs55638725	0.89[ASN][1000 genomes]
rs55672286	0.89[ASN][1000 genomes]
rs55782349	0.85[EUR][1000 genomes]
rs56324716	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58722636	0.87[EUR][1000 genomes]
rs60875963	0.89[ASN][1000 genomes]
rs61849963	0.85[EUR][1000 genomes]
rs61849964	0.85[EUR][1000 genomes]
rs61849974	0.87[EUR][1000 genomes]
rs61849975	0.87[EUR][1000 genomes]
rs61849976	0.85[EUR][1000 genomes]
rs61851539	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080191	1.00[ASN][1000 genomes]
rs7085637	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7085642	0.84[AMR][1000 genomes]
rs7090939	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091420	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74120911	0.84[AMR][1000 genomes]
rs7894995	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7900321	0.89[ASN][1000 genomes]
rs7907491	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7910000	0.89[ASN][1000 genomes]
rs7913116	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922927	0.89[ASN][1000 genomes]
rs9971139	0.89[ASN][1000 genomes]
rs9971348	0.89[ASN][1000 genomes]
rs9971367	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21621800-21627800	Enhancers	Placenta	Placenta
2	chr10:21624200-21627800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:21625800-21629200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr10:21626000-21628600	Weak transcription	NHDF-Ad	bronchial
5	chr10:21626000-21629000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:21626000-21629000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:21626000-21629000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:21626000-21629200	Weak transcription	Osteobl	bone
9	chr10:21626000-21638800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:21626000-21638800	Weak transcription	Aorta	Aorta
11	chr10:21626400-21629200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:21626400-21632200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:21626400-21638800	Weak transcription	Right Atrium	heart
14	chr10:21626400-21639200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr10:21626800-21628600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:21626800-21629000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:21626800-21629200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:21627000-21629000	Weak transcription	Hela-S3	cervix
19	chr10:21627000-21629000	Weak transcription	HMEC	breast
20	chr10:21627000-21639000	Weak transcription	NHEK	skin
21	chr10:21627200-21632600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:21627600-21628200	Weak transcription	A549	lung

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