Variant report

Variant	rs9971139
Chromosome Location	chr10:21590926-21590927
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10218879	0.89[ASN][1000 genomes]
rs10218952	0.89[ASN][1000 genomes]
rs10218971	0.89[ASN][1000 genomes]
rs10218986	0.89[ASN][1000 genomes]
rs11012642	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012644	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012645	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012646	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012648	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012651	0.85[AMR][1000 genomes]
rs11012658	1.00[ASN][1000 genomes]
rs11012665	0.89[ASN][1000 genomes]
rs12240956	1.00[ASN][1000 genomes]
rs12248522	0.89[ASN][1000 genomes]
rs12250778	0.89[ASN][1000 genomes]
rs12256314	0.89[ASN][1000 genomes]
rs12359942	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377089	1.00[ASN][1000 genomes]
rs16921726	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16921744	0.89[ASN][1000 genomes]
rs2360046	0.89[ASN][1000 genomes]
rs28476641	1.00[ASN][1000 genomes]
rs34299719	0.89[ASN][1000 genomes]
rs55638725	1.00[ASN][1000 genomes]
rs55672286	1.00[ASN][1000 genomes]
rs60875963	1.00[ASN][1000 genomes]
rs61851539	0.89[ASN][1000 genomes]
rs61851542	0.89[ASN][1000 genomes]
rs7080191	0.89[ASN][1000 genomes]
rs7085637	1.00[ASN][1000 genomes]
rs7090939	0.89[ASN][1000 genomes]
rs7091420	0.89[ASN][1000 genomes]
rs7894995	0.89[ASN][1000 genomes]
rs7900321	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907491	0.89[ASN][1000 genomes]
rs7910000	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913116	0.89[ASN][1000 genomes]
rs7922927	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9971348	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9971367	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2761579	chr10:21554557-21612760	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21583400-21593000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:21586400-21603000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:21587400-21593000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:21587400-21602800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:21587400-21603000	Weak transcription	Fetal Kidney	kidney
6	chr10:21588600-21598000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr10:21589000-21593400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:21589000-21595400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:21589000-21602800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:21589000-21603000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:21589800-21598000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:21590000-21593200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:21590000-21593200	Weak transcription	A549	lung

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