Variant report

Variant	rs11012651
Chromosome Location	chr10:21590506-21590507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11012644	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11012646	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11012648	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7900321	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7910000	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9971139	0.85[AMR][1000 genomes]
rs9971367	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2761579	chr10:21554557-21612760	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21583400-21593000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:21586400-21603000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:21587400-21593000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:21587400-21602800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:21587400-21603000	Weak transcription	Fetal Kidney	kidney
6	chr10:21588600-21598000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr10:21589000-21593400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:21589000-21595400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:21589000-21602800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:21589000-21603000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:21589800-21598000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:21590000-21593200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:21590000-21593200	Weak transcription	A549	lung
14	chr10:21590400-21590600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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