Variant report

Variant	rs7909938
Chromosome Location	chr10:21623609-21623610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21619468..21621244-chr10:21623343..21625012,2	K562	blood:
2	chr10:21618964..21620909-chr10:21622515..21624166,2	MCF-7	breast:
3	chr10:21622452..21625359-chr10:21813661..21815173,2	K562	blood:

Variant related genes	Relation type
ENSG00000180592	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10218878	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10218911	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10828236	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11012667	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1527044	0.82[AMR][1000 genomes]
rs2039027	0.80[ASN][1000 genomes]
rs2039028	0.80[ASN][1000 genomes]
rs56324716	0.82[ASN][1000 genomes]
rs6482176	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6482177	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7092545	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs71491180	0.91[ASN][1000 genomes]
rs7895221	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7897408	0.83[AMR][1000 genomes]
rs7898836	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7905484	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7914447	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7920204	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7923649	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7909938	NEBL-AS1	cis	Nerve Tibial	GTEx

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21616600-21624000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:21616600-21625400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:21616800-21624000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr10:21616800-21625600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:21617600-21624200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:21619200-21624000	Weak transcription	NH-A	brain
7	chr10:21619200-21624200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:21619400-21623800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:21619400-21624000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:21619400-21624000	Weak transcription	Fetal Muscle Leg	muscle
11	chr10:21619400-21624000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr10:21619800-21624000	Weak transcription	Osteobl	bone
13	chr10:21619800-21624200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:21620000-21624800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:21620200-21625200	Weak transcription	Adipose Nuclei	Adipose
16	chr10:21620200-21625200	Weak transcription	Lung	lung
17	chr10:21621000-21624000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr10:21621800-21627800	Enhancers	Placenta	Placenta
19	chr10:21622600-21625400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:21622600-21626000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:21623000-21624000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:21623000-21625200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:21623000-21626000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:21623000-21626000	Enhancers	NHLF	lung
25	chr10:21623000-21626800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr10:21623200-21624000	Weak transcription	HepG2	liver
27	chr10:21623200-21624200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:21623200-21625200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:21623200-21625200	Enhancers	NHEK	skin
30	chr10:21623200-21625400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:21623200-21626000	Enhancers	NHDF-Ad	bronchial
32	chr10:21623400-21624000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr10:21623400-21624000	Enhancers	Hela-S3	cervix
34	chr10:21623400-21625400	Enhancers	HMEC	breast
35	chr10:21623400-21625600	Enhancers	HUVEC	blood vessel
36	chr10:21623400-21625800	Enhancers	Placenta Amnion	Placenta Amnion
37	chr10:21623400-21626000	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr10:21623600-21623800	Enhancers	A549	lung
39	chr10:21623600-21623800	Enhancers	K562	blood

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