Variant report

Variant	rs11012656
Chromosome Location	chr10:21596281-21596282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11012641	0.80[AFR][1000 genomes]
rs11012652	0.82[AFR][1000 genomes]
rs12241514	0.86[ASN][1000 genomes]
rs12244309	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259952	0.86[ASN][1000 genomes]
rs13376927	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13376997	0.88[ASN][1000 genomes]
rs16921717	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16921721	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16921729	0.89[ASN][1000 genomes]
rs28460291	0.89[ASN][1000 genomes]
rs57729500	0.89[ASN][1000 genomes]
rs60558873	0.89[ASN][1000 genomes]
rs61055947	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61142377	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7070371	0.89[ASN][1000 genomes]
rs7085642	0.82[ASN][1000 genomes]
rs74120911	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2761579	chr10:21554557-21612760	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21586400-21603000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:21587400-21602800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr10:21587400-21603000	Weak transcription	Fetal Kidney	kidney
4	chr10:21588600-21598000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr10:21589000-21602800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:21589000-21603000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:21589800-21598000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr10:21593600-21603000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:21593800-21601600	Weak transcription	A549	lung
10	chr10:21595000-21598000	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links