Variant report

Variant	rs11012641
Chromosome Location	chr10:21579227-21579228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21571238..21572802-chr10:21576440..21579400,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10828231	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828232	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012652	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11012656	0.80[AFR][1000 genomes]
rs11813176	0.89[EUR][1000 genomes]
rs11813592	0.89[EUR][1000 genomes]
rs2293438	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56958459	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv971871	chr10:21460392-21579987	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2761579	chr10:21554557-21612760	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21564200-21581600	Weak transcription	Right Atrium	heart
2	chr10:21567400-21582800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:21568200-21580400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr10:21568200-21581600	Weak transcription	Ovary	ovary
5	chr10:21570200-21580400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:21571600-21583000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:21575000-21581000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:21575000-21581800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:21575200-21579400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:21575200-21580000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr10:21576400-21579400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr10:21576400-21579800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr10:21576400-21581800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr10:21576400-21583200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:21578000-21579400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:21578200-21579400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr10:21578200-21579600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:21578200-21580000	Genic enhancers	A549	lung
19	chr10:21578200-21580600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr10:21578200-21580600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:21578400-21579600	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr10:21578400-21581800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:21578600-21580000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:21578600-21580800	Weak transcription	Adipose Nuclei	Adipose
25	chr10:21578600-21580800	Weak transcription	Fetal Lung	lung
26	chr10:21578800-21580000	Enhancers	H9 Cell Line	embryonic stem cell
27	chr10:21578800-21580800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:21579000-21580200	Enhancers	HSMMtube	muscle
29	chr10:21579000-21580400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr10:21579000-21581000	Enhancers	NHDF-Ad	bronchial
31	chr10:21579200-21579600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:21579200-21579800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr10:21579200-21580000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr10:21579200-21580600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr10:21579200-21580800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:21579200-21580800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:21579200-21580800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links